| Literature DB >> 33511392 |
Megan I Samuelson1, Stephanie J Chen1, Sarag A Boukhar1, Eric M Schnieders2, Mackenzie L Walhof2, Andrew M Bellizzi1, Robert A Robinson1, Anand Rajan K D1.
Abstract
OBJECTIVES: The ongoing global severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic necessitates adaptations in the practice of surgical pathology at scale. Primary diagnosis by whole-slide imaging (WSI) is a key component that would aid departments in providing uninterrupted histopathology diagnosis and maintaining revenue streams from disruption. We sought to perform rapid validation of the use of WSI in primary diagnosis meeting recommendations of the College of American Pathologists guidelines.Entities:
Keywords: Case management software; Digital pathology; Primary digital diagnosis; SARS-CoV-2; WSI validation; Whole-slide imaging
Year: 2021 PMID: 33511392 PMCID: PMC7929400 DOI: 10.1093/ajcp/aqaa280
Source DB: PubMed Journal: Am J Clin Pathol ISSN: 0002-9173 Impact factor: 2.493
Distribution of Digital Cases (n = 171) by Small and Large Case Type and Anatomic Site by Subspecialty
| Case Type | |||
|---|---|---|---|
| Site | Small | Large | Total |
| Head and neck | |||
| Hard palate | 1 | 1 | |
| Larynx | 2 | 1 | 3 |
| Mandible | 3 | 3 | |
| Maxilla | 2 | 2 | |
| Nose | 1 | 1 | |
| Oral cavity | 6 | 5 | 11 |
| Parathyroid | 2 | 2 | |
| Thyroid | 2 | 2 | |
| Tonsil | 1 | 1 | |
| Total | 17 | 9 | 26 |
| Skin | |||
| Abdomen | 1 | 1 | |
| Arm | 2 | 2 | |
| Back | 2 | 2 | |
| Ear | 2 | 2 | |
| Hand | 1 | 1 | |
| Melanoma | 1 | 1 | |
| Neck | 3 | 3 | |
| Nose | 1 | 1 | |
| Penis | 2 | 2 | |
| Right thumb | 1 | 1 | |
| Scalp | 2 | 2 | |
| Other sites | 5 | 5 | |
| Umbilicus | 1 | 1 | |
| Total | 23 | 1 | 24 |
| Genitourinary | |||
| Kidney | 3 | 3 | 6 |
| Prostate | 2 | 8 | 10 |
| Ureter | 1 | 1 | |
| Urethra | 1 | 1 | |
| Urinary bladder | 5 | 1 | 6 |
| Vas deferens | 6 | 6 | |
| Vulva | 3 | 3 | |
| Total | 18 | 15 | 33 |
| Gastrointestinal | |||
| Appendix | 3 | 3 | |
| Colon | 8 | 1 | 9 |
| Esophagus | 1 | 1 | |
| Gallbladder | 1 | 1 | |
| Ileum | 2 | 2 | |
| Liver | 2 | 2 | |
| Multiple biopsies | 1 | 5 | 6 |
| Peritoneum | 1 | 1 | |
| Rectum | 1 | 1 | |
| Small intestine | 1 | 1 | |
| Stomach | 4 | 4 | |
| Total | 21 | 10 | 31 |
| Breast | |||
| Axilla | 1 | 1 | |
| Breast | 11 | 5 | 16 |
| Capsule | 2 | 2 | |
| Total | 14 | 5 | 19 |
| Thoracic | |||
| Bronchus | 1 | 1 | |
| Heart | 1 | 1 | |
| Lung | 2 | 1 | 3 |
| Total | 4 | 1 | 5 |
| Gynecologic | |||
| Cervix | 10 | 10 | |
| Endometrium | 4 | 4 | |
| Endometrium + cervix | 1 | 1 | |
| Fallopian tubes | 1 | 1 | 2 |
| Fallopian tubes + ovaries | 1 | 1 | |
| Uterus | 1 | 1 | 2 |
| Uterus + fallopian tubes | 2 | 2 | |
| Uterus + fallopian tubes + ovaries | 5 | 5 | |
| Uterus + fallopian tubes + ovary | 1 | 1 | |
| Vagina | 1 | 1 | |
| Vulva | 3 | 1 | 4 |
| Total | 21 | 12 | 33 |
| Grand total | 118 | 53 | 171 |
Figure 1Case selection and exclusion and scanning quality control process used in the study. IHC, immunohistochemistry; WSI, whole-slide imaging.
Mean Intraobserver Agreement (Concordance) and 95% CIs in 1000 Samples (n = 18)a
| Pathologist 1 | Pathologist 2 | Pathologist 3 | Pathologist 4 | Pathologist 5 | |
|---|---|---|---|---|---|
| Mean concordance, % | 82.96 | 93.61 | 72.20 | 94.18 | 75.72 |
| 95% CI | 82.56-83.36 | 93.38-93.84 | 71.77-72.62 | 93.95-94.42 | 75.26-76.17 |
| Mean concordance counting major discrepancies, % | 94.28 | 97 | 90.49 | 94.18 | 94.59 |
| 95% CI | 94.03-94.53 | 96.82-97.17 | 90.20-90.78 | 93.95-94.42 | 94.35-94.83 |
CI, confidence interval.
aSamples were drawn from the total cases (range, 32-37) examined by each study pathologist. Minor discrepancies were adjudicated and resolved in discussion with a second expert, as needed.
Figure 3Distribution of percentage of agreement in 90 cases (1,000 samples) drawn from total (n = 171). A, Concordance rate counting minor and major diagnostic discrepancies, with a mean of 83.66 (95% confidence interval [CI], 83.49-83.83; range, 75.56-92.22). B, Distribution of concordance counting only major discrepancies, with a mean of 94.58 (95% CI, 94.48-94.68; range, 90-100).
Distribution of Cases and Slides Scanned per Participant
| Pathologist | Cases | Slides | Slides Rescanned | Case Exclusions | Average Slides/Case |
|---|---|---|---|---|---|
| 1 | 35 | 265 | 4 | 1 | 7.6 |
| 2 | 33 | 221 | 32 | 1 | 6.7 |
| 3 | 32 | 355 | 36 | 4 | 11.1 |
| 4 | 34 | 205 | 11 | 3 | 6 |
| 5 | 37 | 244 | 5 | — | 6.59 |
| Total | 171 | 1,290 | 88 | 9 | 7.5 |
Major and Minor Discrepancies by Subspecialty, Adjudicated in Glass vs Digital Diagnosis
| Disagreement Category | Site and Specimen Type | Original Diagnosis (Glass) | Digital Diagnosis | Count, n |
|---|---|---|---|---|
| Breast | ||||
| Major | Biopsy | Atypical ductal hyperplasia | Usual ductal hyperplasia | 1 |
| Minor | Biopsy | Invasive ductal carcinoma ESBR grade 1 | Invasive ductal carcinoma ESBR grade 2 | 5 |
| Dermatologic | ||||
| Minor | Penile skin | Fungal elements mentioned | Presence of fungal elements not mentioned | 1 |
| Not specified | Mild atypia | Moderate atypia | 1 | |
| Gastrointestinal | ||||
| Major | Gastric biopsy | Necroinflammatory debris | Not identified | 1 |
| Colonic biopsy | Traditional serrated adenoma | Not identified | 1 | |
| Minor | Esophageal biopsy | Epithelial atypia, indefinite for dysplasia, favor low-grade dysplasia | Epithelial atypia, indefinite for dysplasia, favor reactive | 1 |
| Gastric biopsy | Fundic gland polyp | Polypoid colonic mucosa | 1 | |
| Colonic biopsy | Hyperplastic polyp | Tubular adenoma | 1 | |
| Rectal biopsy | Leiomyoma of muscularis propria | Not identified | 1 | |
| Colonic biopsy | Lymphocytic colitis identified | Not identified in same part; identified in other biopsies | 1 | |
| Appendectomy | Mild acute appendicitis | No appendicitis | 1 | |
| Multiple part | Tubular adenoma | Tubular adenoma not identified; different part in case shows adenocarcinoma | 1 | |
| Genitourinary | ||||
| Major | Bladder biopsy | “Benign urothelium with focal urethritis” | “Suspicious for low-grade papillary urothelial carcinoma” | 1 |
| Prostate biopsy | Atypical small acinar proliferation | Prostatic adenocarcinoma Gleason grade 3 + 4 = 7 | 1 | |
| Prostate biopsy | Benign | Suspicious for carcinoma | 1 | |
| Minor | Prostate biopsy | Prostatic adenocarcinoma Gleason Grade 3 + 3 = Score 6 (GG 1) | Prostatic adenocarcinoma Gleason grade 3 + 4 = 7 (GG 2) | 1 |
| Gynecologic | ||||
| Major | Cervix biopsy | Low-grade squamous intraepithelial lesion | Reactive change | 1 |
| Oophorectomy | Mucinous cystadenoma | Borderline mucinous tumor | 1 | |
| Head and Neck | ||||
| Minor | Oral biopsy | Invasive squamous cell carcinoma | “Atypical cells, cannot exclude squamous cell carcinoma | 1 |
| Oral biopsy | Necroinflammatory debris | Not identified | 1 | |
| Oral biopsy | “Residual invasive squamous cell carcinoma” | “Atypical cells in necrotic tissue, cannot exclude squamous cell carcinoma” | 1 | |
| Oral resection | Perineural invasion identified | Perineural invasion not identified | 1 | |
| Thoracic | ||||
| Major | Lung resection | Micropapillary predominant lung adenocarcinoma | Acinar predominant lung adenocarcinoma | 1 |
ESBR, Elston-Ellis modification of Scarff-Bloom-Richardson; GG, Grade Group.
Intraobserver Agreement (Concordance) Among 5 Study Pathologistsa
| Pathologist 1 | Pathologist 2 | Pathologist 3 | Pathologist 4 | Pathologist 5 | |
|---|---|---|---|---|---|
| Base concordance | 29/35 (82.8) | 32/33 (93.9) | 23/32 (71.8) | 32/34 (94.1) | 28/37 (75.7) |
| Base disagreement rate | 6/35 (11.7) | 2/33 (6.06) | 9/32 (28.1) | 2/34 (5.8) | 9/37 (24.3) |
| Concordance counting major disagreements | 33/35 (94.2) | 32/33 (96.9) | 30/32 (93.7) | 32/34 (94.1) | 35/37 (94.6) |
| Major disagreement rate | 2/35 (5.8) | 1/33 (3.03) | 2/32 (6.2) | 2/34 (5.8) | 2/37 (5.4) |
aData reflect all cases examined by each pathologist (range, 32-37). Concordant cases are listed over total cases, and the percentage agreement is in parentheses.