Literature DB >> 33511112

Structural Insights Into m6A-Erasers: A Step Toward Understanding Molecule Specificity and Potential Antiviral Targeting.

Mahmoud Bayoumi1,2, Muhammad Munir1.   

Abstract

The cellular RNA can acquire a variety of chemical modifications during the cell cycle, and compelling pieces of evidence highlight the importance of these modifications in determining the metabolism of RNA and, subsequently, cell physiology. Among myriads of modifications, methylation at the N6-position of adenosine (m6A) is the most important and abundant internal modification in the messenger RNA. The m6A marks are installed by methyltransferase complex proteins (writers) in the majority of eukaryotes and dynamically reversed by demethylases such as FTO and ALKBH5 (erasers). The incorporated m6A marks on the RNA transcripts are recognized by m6A-binding proteins collectively called readers. Recent epigenetic studies have unequivocally highlighted the association of m6A demethylases with a range of biomedical aspects, including human diseases, cancers, and metabolic disorders. Moreover, the mechanisms of demethylation by m6A erasers represent a new frontier in the future basic research on RNA biology. In this review, we focused on recent advances describing various physiological, pathological, and viral regulatory roles of m6A erasers. Additionally, we aim to analyze structural insights into well-known m6A-demethylases in assessing their substrate binding-specificity, efficiency, and selectivity. Knowledge on cellular and viral RNA metabolism will shed light on m6A-specific recognition by demethylases and will provide foundations for the future development of efficacious therapeutic agents to various cancerous conditions and open new avenues for the development of antivirals.
Copyright © 2021 Bayoumi and Munir.

Entities:  

Keywords:  ALKBH5; FTO; antiviral; demethylation; epigenetics; evolution; m6A; structural insights

Year:  2021        PMID: 33511112      PMCID: PMC7835257          DOI: 10.3389/fcell.2020.587108

Source DB:  PubMed          Journal:  Front Cell Dev Biol        ISSN: 2296-634X


  143 in total

1.  The atomic resolution structure of human AlkB homolog 7 (ALKBH7), a key protein for programmed necrosis and fat metabolism.

Authors:  Guoqiang Wang; Qingzhong He; Chong Feng; Yang Liu; Zengqin Deng; Xiaoxuan Qi; Wei Wu; Pinchao Mei; Zhongzhou Chen
Journal:  J Biol Chem       Date:  2014-08-13       Impact factor: 5.157

2.  Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition.

Authors:  Chong Feng; Yang Liu; Guoqiang Wang; Zengqin Deng; Qi Zhang; Wei Wu; Yufeng Tong; Changmei Cheng; Zhongzhou Chen
Journal:  J Biol Chem       Date:  2014-03-10       Impact factor: 5.157

3.  Rhein Inhibits AlkB Repair Enzymes and Sensitizes Cells to Methylated DNA Damage.

Authors:  Qi Li; Yue Huang; Xichun Liu; Jianhua Gan; Hao Chen; Cai-Guang Yang
Journal:  J Biol Chem       Date:  2016-03-25       Impact factor: 5.157

4.  Precise localization of m6A in Rous sarcoma virus RNA reveals clustering of methylation sites: implications for RNA processing.

Authors:  S E Kane; K Beemon
Journal:  Mol Cell Biol       Date:  1985-09       Impact factor: 4.272

Review 5.  FTO, m6 Am , and the hypothesis of reversible epitranscriptomic mRNA modifications.

Authors:  Jan Mauer; Samie R Jaffrey
Journal:  FEBS Lett       Date:  2018-05-24       Impact factor: 4.124

Review 6.  m6A Modification in Coding and Non-coding RNAs: Roles and Therapeutic Implications in Cancer.

Authors:  Huilin Huang; Hengyou Weng; Jianjun Chen
Journal:  Cancer Cell       Date:  2020-03-16       Impact factor: 31.743

7.  The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution.

Authors:  Modi Safra; Aldema Sas-Chen; Ronit Nir; Roni Winkler; Aharon Nachshon; Dan Bar-Yaacov; Matthias Erlacher; Walter Rossmanith; Noam Stern-Ginossar; Schraga Schwartz
Journal:  Nature       Date:  2017-10-25       Impact factor: 49.962

8.  Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.

Authors:  Bastian Linder; Anya V Grozhik; Anthony O Olarerin-George; Cem Meydan; Christopher E Mason; Samie R Jaffrey
Journal:  Nat Methods       Date:  2015-06-29       Impact factor: 28.547

9.  Reduced m6A modification predicts malignant phenotypes and augmented Wnt/PI3K-Akt signaling in gastric cancer.

Authors:  Cheng Zhang; Mengqi Zhang; Sai Ge; Wenwen Huang; Xiaoting Lin; Jing Gao; Jifang Gong; Lin Shen
Journal:  Cancer Med       Date:  2019-06-26       Impact factor: 4.452

10.  Structures of human ALKBH5 demethylase reveal a unique binding mode for specific single-stranded N6-methyladenosine RNA demethylation.

Authors:  Chao Xu; Ke Liu; Wolfram Tempel; Marina Demetriades; WeiShen Aik; Christopher J Schofield; Jinrong Min
Journal:  J Biol Chem       Date:  2014-04-28       Impact factor: 5.157

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  4 in total

1.  Evolutionary conservation of the DRACH signatures of potential N6-methyladenosine (m6A) sites among influenza A viruses.

Authors:  Mahmoud Bayoumi; Muhammad Munir
Journal:  Sci Rep       Date:  2021-02-25       Impact factor: 4.996

Review 2.  Potential Use of CRISPR/Cas13 Machinery in Understanding Virus-Host Interaction.

Authors:  Mahmoud Bayoumi; Muhammad Munir
Journal:  Front Microbiol       Date:  2021-11-26       Impact factor: 5.640

Review 3.  The emerging therapeutic target of dynamic and reversible N6-methyladenosine modification during cancer development.

Authors:  Shougeng Liu; Sihong Chen; Chengfang Tang; Yingxi Zhao; Wei Cui; Lina Jia; Lihui Wang
Journal:  Front Oncol       Date:  2022-09-26       Impact factor: 5.738

Review 4.  Long Non-Coding RNA Epigenetics.

Authors:  Marek Kazimierczyk; Jan Wrzesinski
Journal:  Int J Mol Sci       Date:  2021-06-07       Impact factor: 5.923

  4 in total

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