Literature DB >> 33510748

Role of Chromatin Architecture in Plant Stress Responses: An Update.

Sneha Lata Bhadouriya1, Sandhya Mehrotra1, Mahesh K Basantani2, Gary J Loake3, Rajesh Mehrotra1.   

Abstract

Sessile plants possess an assembly of signaling pathways that perceive and transmit environmental signals, ultimately resulting in transcriptional reprogramming. Histone is a key feature of chromatin structure. Numerous histone-modifying proteins act under different environmental stress conditions to help modulate gene expression. DNA methylation and histone modification are crucial for genome reprogramming for tissue-specific gene expression and global gene silencing. Different classes of chromatin remodelers including SWI/SNF, ISWI, INO80, and CHD are reported to act upon chromatin in different organisms, under diverse stresses, to convert chromatin from a transcriptionally inactive to a transcriptionally active state. The architecture of chromatin at a given promoter is crucial for determining the transcriptional readout. Further, the connection between somatic memory and chromatin modifications may suggest a mechanistic basis for a stress memory. Studies have suggested that there is a functional connection between changes in nuclear organization and stress conditions. In this review, we discuss the role of chromatin architecture in different stress responses and the current evidence on somatic, intergenerational, and transgenerational stress memory.
Copyright © 2021 Bhadouriya, Mehrotra, Basantani, Loake and Mehrotra.

Entities:  

Keywords:  abiotic stress; chromatin remodeling; epigenetics; histone variants; intergenerational; nucleosome; transcription; transgenerational

Year:  2021        PMID: 33510748      PMCID: PMC7835326          DOI: 10.3389/fpls.2020.603380

Source DB:  PubMed          Journal:  Front Plant Sci        ISSN: 1664-462X            Impact factor:   5.753


  243 in total

1.  Sumoylation of the yeast Gcn5 protein.

Authors:  David E Sterner; Dafna Nathan; Alison Reindle; Erica S Johnson; Shelley L Berger
Journal:  Biochemistry       Date:  2006-01-24       Impact factor: 3.162

2.  Expression analysis of histone acetyltransferases in rice under drought stress.

Authors:  Hui Fang; Xia Liu; Greg Thorn; Jun Duan; Lining Tian
Journal:  Biochem Biophys Res Commun       Date:  2013-12-02       Impact factor: 3.575

Review 3.  Regulation of Plant Cellular and Organismal Development by SUMO.

Authors:  Nabil Elrouby
Journal:  Adv Exp Med Biol       Date:  2017       Impact factor: 2.622

Review 4.  Environmental responses mediated by histone variants.

Authors:  Paul B Talbert; Steven Henikoff
Journal:  Trends Cell Biol       Date:  2014-08-20       Impact factor: 20.808

5.  The Arabidopsis STRESS RESPONSE SUPPRESSOR DEAD-box RNA helicases are nucleolar- and chromocenter-localized proteins that undergo stress-mediated relocalization and are involved in epigenetic gene silencing.

Authors:  Asif Khan; Anna Garbelli; Serena Grossi; Assa Florentin; Giorgia Batelli; Tania Acuna; Gaston Zolla; Yuval Kaye; Laju K Paul; Jian-Kang Zhu; Giovanni Maga; Gideon Grafi; Simon Barak
Journal:  Plant J       Date:  2014-05-27       Impact factor: 6.417

6.  In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning.

Authors:  Maria Greco; Adriana Chiappetta; Leonardo Bruno; Maria Beatrice Bitonti
Journal:  J Exp Bot       Date:  2011-11-04       Impact factor: 6.992

7.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

8.  Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression.

Authors:  Rafal Archacki; Ruslan Yatusevich; Daniel Buszewicz; Katarzyna Krzyczmonik; Jacek Patryn; Roksana Iwanicka-Nowicka; Przemyslaw Biecek; Bartek Wilczynski; Marta Koblowska; Andrzej Jerzmanowski; Szymon Swiezewski
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

Review 9.  Regulation of Plant Growth and Development: A Review From a Chromatin Remodeling Perspective.

Authors:  Simon P Ojolo; Shijiang Cao; S V G N Priyadarshani; Weimin Li; Maokai Yan; Mohammad Aslam; Heming Zhao; Yuan Qin
Journal:  Front Plant Sci       Date:  2018-08-22       Impact factor: 5.753

10.  Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns.

Authors:  Ruben Gutzat; Klaus Rembart; Thomas Nussbaumer; Falko Hofmann; Rahul Pisupati; Gabriele Bradamante; Nina Daubel; Angelika Gaidora; Nicole Lettner; Mattia Donà; Magnus Nordborg; Michael Nodine; Ortrun Mittelsten Scheid
Journal:  EMBO J       Date:  2020-08-20       Impact factor: 14.012

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  10 in total

Review 1.  Epigenetic control of abiotic stress signaling in plants.

Authors:  Sunglan Chung; Chian Kwon; Jae-Hoon Lee
Journal:  Genes Genomics       Date:  2021-09-13       Impact factor: 1.839

Review 2.  Chromatin-Based Transcriptional Reprogramming in Plants under Abiotic Stresses.

Authors:  Koushik Halder; Abira Chaudhuri; Malik Z Abdin; Manoj Majee; Asis Datta
Journal:  Plants (Basel)       Date:  2022-05-29

Review 3.  Plant Responses to Biotic Stress: Old Memories Matter.

Authors:  Anirban Bhar; Amrita Chakraborty; Amit Roy
Journal:  Plants (Basel)       Date:  2021-12-28

Review 4.  The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation.

Authors:  Muthusamy Ramakrishnan; Lakkakula Satish; Ruslan Kalendar; Mathiyazhagan Narayanan; Sabariswaran Kandasamy; Anket Sharma; Abolghassem Emamverdian; Qiang Wei; Mingbing Zhou
Journal:  Int J Mol Sci       Date:  2021-10-21       Impact factor: 5.923

Review 5.  ICE-CBF-COR Signaling Cascade and Its Regulation in Plants Responding to Cold Stress.

Authors:  Delight Hwarari; Yuanlin Guan; Baseer Ahmad; Ali Movahedi; Tian Min; Zhaodong Hao; Ye Lu; Jinhui Chen; Liming Yang
Journal:  Int J Mol Sci       Date:  2022-01-28       Impact factor: 5.923

6.  In Silico Analysis of CCGAC and CATGTG Cis-regulatory Elements Across Genomes Reveals their Roles in Gene Regulation under Stress.

Authors:  Sneha Lata Bhadouriya; Abhishek Suresh; Himanshu Gupta; Sandhya Mehrotra; Divya Gupta; Rajesh Mehrotra
Journal:  Curr Genomics       Date:  2021-12-30       Impact factor: 2.689

7.  The early response of oil palm (Elaeis guineensis Jacq.) plants to water deprivation: Expression analysis of miRNAs and their putative target genes, and similarities with the response to salinity stress.

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Journal:  Front Plant Sci       Date:  2022-09-23       Impact factor: 6.627

Review 8.  Deciphering the Epigenetic Alphabet Involved in Transgenerational Stress Memory in Crops.

Authors:  Velimir Mladenov; Vasileios Fotopoulos; Eirini Kaiserli; Erna Karalija; Stephane Maury; Miroslav Baranek; Naama Segal; Pilar S Testillano; Valya Vassileva; Glória Pinto; Manuela Nagel; Hans Hoenicka; Dragana Miladinović; Philippe Gallusci; Chiara Vergata; Aliki Kapazoglou; Eleni Abraham; Eleni Tani; Maria Gerakari; Efi Sarri; Evaggelia Avramidou; Mateo Gašparović; Federico Martinelli
Journal:  Int J Mol Sci       Date:  2021-07-01       Impact factor: 5.923

9.  Transcriptomics Integrated With Metabolomics Reveal the Effects of Ultraviolet-B Radiation on Flavonoid Biosynthesis in Antarctic Moss.

Authors:  Shenghao Liu; Shuo Fang; Chenlin Liu; Linlin Zhao; Bailin Cong; Zhaohui Zhang
Journal:  Front Plant Sci       Date:  2021-12-08       Impact factor: 5.753

Review 10.  Understanding 3D Genome Organization and Its Effect on Transcriptional Gene Regulation Under Environmental Stress in Plant: A Chromatin Perspective.

Authors:  Suresh Kumar; Simardeep Kaur; Karishma Seem; Santosh Kumar; Trilochan Mohapatra
Journal:  Front Cell Dev Biol       Date:  2021-12-08
  10 in total

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