Literature DB >> 33510648

Physiological Network From Anthropometric and Blood Test Biomarkers.

Antonio Barajas-Martínez1,2, Elizabeth Ibarra-Coronado2,3, Martha Patricia Sierra-Vargas4,5, Ivette Cruz-Bautista6, Paloma Almeda-Valdes6, Carlos A Aguilar-Salinas2,6,7, Ruben Fossion2,3, Christopher R Stephens2,3, Claudia Vargas-Domínguez8, Octavio Gamaliel Atzatzi-Aguilar8,9, Yazmín Debray-García8, Rogelio García-Torrentera10, Karen Bobadilla8, María Augusta Naranjo Meneses6, Dulce Abril Mena Orozco6, César Ernesto Lam-Chung6, Vania Martínez Garcés11, Octavio A Lecona1,2, Arlex O Marín-García2, Alejandro Frank2,3,12, Ana Leonor Rivera2,3.   

Abstract

Currently, research in physiology focuses on molecular mechanisms underlying the functioning of living organisms. Reductionist strategies are used to decompose systems into their components and to measure changes of physiological variables between experimental conditions. However, how these isolated physiological variables translate into the emergence -and collapse- of biological functions of the organism as a whole is often a less tractable question. To generate a useful representation of physiology as a system, known and unknown interactions between heterogeneous physiological components must be taken into account. In this work we use a Complex Inference Networks approach to build physiological networks from biomarkers. We employ two unrelated databases to generate Spearman correlation matrices of 81 and 54 physiological variables, respectively, including endocrine, mechanic, biochemical, anthropometric, physiological, and cellular variables. From these correlation matrices we generated physiological networks by selecting a p-value threshold indicating statistically significant links. We compared the networks from both samples to show which features are robust and representative for physiology in health. We found that although network topology is sensitive to the p-value threshold, an optimal value may be defined by combining criteria of stability of topological features and network connectedness. Unsupervised community detection algorithms allowed to obtain functional clusters that correlate well with current medical knowledge. Finally, we describe the topology of the physiological networks, which lie between random and ordered structural features, and may reflect system robustness and adaptability. Modularity of physiological networks allows to explore functional clusters that are consistent even when considering different physiological variables. Altogether Complex Inference Networks from biomarkers provide an efficient implementation of a systems biology approach that is visually understandable and robust. We hypothesize that physiological networks allow to translate concepts such as homeostasis into quantifiable properties of biological systems useful for determination and quantification of health and disease.
Copyright © 2021 Barajas-Martínez, Ibarra-Coronado, Sierra-Vargas, Cruz-Bautista, Almeda-Valdes, Aguilar-Salinas, Fossion, Stephens, Vargas-Domínguez, Atzatzi-Aguilar, Debray-García, García-Torrentera, Bobadilla, Naranjo Meneses, Mena Orozco, Lam-Chung, Martínez Garcés, Lecona, Marín-García, Frank and Rivera.

Entities:  

Keywords:  anthropometric measures; blood test biomarkers; complex inference network; homeostasis; physiological networks

Year:  2021        PMID: 33510648      PMCID: PMC7835885          DOI: 10.3389/fphys.2020.612598

Source DB:  PubMed          Journal:  Front Physiol        ISSN: 1664-042X            Impact factor:   4.566


  52 in total

Review 1.  Assessing physiological complexity.

Authors:  W W Burggren; M G Monticino
Journal:  J Exp Biol       Date:  2005-09       Impact factor: 3.312

2.  Statistical mechanics of community detection.

Authors:  Jörg Reichardt; Stefan Bornholdt
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-07-18

3.  Body fat percentage is more strongly associated with biomarkers of low-grade inflammation than traditional cardiometabolic risk factors in healthy young adults - the Lifestyle, Biomarkers, and Atherosclerosis study.

Authors:  Paul Pettersson-Pablo; Torbjörn K Nilsson; Lars H Breimer; Anita Hurtig-Wennlöf
Journal:  Scand J Clin Lab Invest       Date:  2019-02-15       Impact factor: 1.713

Review 4.  Components of the complete blood count as risk predictors for coronary heart disease: in-depth review and update.

Authors:  Mohammad Madjid; Omid Fatemi
Journal:  Tex Heart Inst J       Date:  2013

Review 5.  The adipoinsular axis: effects of leptin on pancreatic beta-cells.

Authors:  T J Kieffer; J F Habener
Journal:  Am J Physiol Endocrinol Metab       Date:  2000-01       Impact factor: 4.310

6.  Eosinophils are a major source of nitric oxide-derived oxidants in severe asthma: characterization of pathways available to eosinophils for generating reactive nitrogen species.

Authors:  J C MacPherson; S A Comhair; S C Erzurum; D F Klein; M F Lipscomb; M S Kavuru; M K Samoszuk; S L Hazen
Journal:  J Immunol       Date:  2001-05-01       Impact factor: 5.422

7.  Evaluation of Patients with Leukocytosis.

Authors:  Lyrad K Riley; Jedda Rupert
Journal:  Am Fam Physician       Date:  2015-12-01       Impact factor: 3.292

8.  WGCNA: an R package for weighted correlation network analysis.

Authors:  Peter Langfelder; Steve Horvath
Journal:  BMC Bioinformatics       Date:  2008-12-29       Impact factor: 3.169

9.  Network Physiology: How Organ Systems Dynamically Interact.

Authors:  Ronny P Bartsch; Kang K L Liu; Amir Bashan; Plamen Ch Ivanov
Journal:  PLoS One       Date:  2015-11-10       Impact factor: 3.240

10.  Blood Urea Nitrogen (BUN) is independently associated with mortality in critically ill patients admitted to ICU.

Authors:  Okan Arihan; Bernhard Wernly; Michael Lichtenauer; Marcus Franz; Bjoern Kabisch; Johanna Muessig; Maryna Masyuk; Alexander Lauten; Paul Christian Schulze; Uta C Hoppe; Malte Kelm; Christian Jung
Journal:  PLoS One       Date:  2018-01-25       Impact factor: 3.240

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  1 in total

1.  Physiological Network Is Disrupted in Severe COVID-19.

Authors:  Antonio Barajas-Martínez; Roopa Mehta; Elizabeth Ibarra-Coronado; Ruben Fossion; Vania J Martínez Garcés; Monserrat Ramírez Arellano; Ibar A González Alvarez; Yamilet Viana Moncada Bautista; Omar Y Bello-Chavolla; Natalia Ramírez Pedraza; Bethsabel Rodríguez Encinas; Carolina Isabel Pérez Carrión; María Isabel Jasso Ávila; Jorge Carlos Valladares-García; Pablo Esteban Vanegas-Cedillo; Diana Hernández Juárez; Arsenio Vargas-Vázquez; Neftali Eduardo Antonio-Villa; Paloma Almeda-Valdes; Osbaldo Resendis-Antonio; Marcia Hiriart; Alejandro Frank; Carlos A Aguilar-Salinas; Ana Leonor Rivera
Journal:  Front Physiol       Date:  2022-03-10       Impact factor: 4.566

  1 in total

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