Literature DB >> 33510154

A patient-centric dataset of images and metadata for identifying melanomas using clinical context.

Veronica Rotemberg1, Nicholas Kurtansky2, Brigid Betz-Stablein3, Liam Caffery3, Emmanouil Chousakos2,4, Noel Codella5, Marc Combalia6, Stephen Dusza2, Pascale Guitera7, David Gutman8, Allan Halpern2, Brian Helba9, Harald Kittler10, Kivanc Kose2, Steve Langer11, Konstantinos Lioprys4, Josep Malvehy6, Shenara Musthaq2,12, Jabpani Nanda2,13, Ofer Reiter2,14, George Shih15, Alexander Stratigos4, Philipp Tschandl10, Jochen Weber2, H Peter Soyer3.   

Abstract

Prior skin image datasets have not addressed patient-level information obtained from multiple skin lesions from the same patient. Though artificial intelligence classification algorithms have achieved expert-level performance in controlled studies examining single images, in practice dermatologists base their judgment holistically from multiple lesions on the same patient. The 2020 SIIM-ISIC Melanoma Classification challenge dataset described herein was constructed to address this discrepancy between prior challenges and clinical practice, providing for each image in the dataset an identifier allowing lesions from the same patient to be mapped to one another. This patient-level contextual information is frequently used by clinicians to diagnose melanoma and is especially useful in ruling out false positives in patients with many atypical nevi. The dataset represents 2,056 patients (20.8% with at least one melanoma, 79.2% with zero melanomas) from three continents with an average of 16 lesions per patient, consisting of 33,126 dermoscopic images and 584 (1.8%) histopathologically confirmed melanomas compared with benign melanoma mimickers.

Entities:  

Mesh:

Year:  2021        PMID: 33510154      PMCID: PMC7843971          DOI: 10.1038/s41597-021-00815-z

Source DB:  PubMed          Journal:  Sci Data        ISSN: 2052-4463            Impact factor:   6.444


  17 in total

Review 1.  Melanoma: epidemiology, risk factors, pathogenesis, diagnosis and classification.

Authors:  Marco Rastrelli; Saveria Tropea; Carlo Riccardo Rossi; Mauro Alaibac
Journal:  In Vivo       Date:  2014 Nov-Dec       Impact factor: 2.155

Review 2.  Dermoscopy of pigmented skin lesions: results of a consensus meeting via the Internet.

Authors:  Giuseppe Argenziano; H Peter Soyer; Sergio Chimenti; Renato Talamini; Rosamaria Corona; Francesco Sera; Michael Binder; Lorenzo Cerroni; Gaetano De Rosa; Gerardo Ferrara; Rainer Hofmann-Wellenhof; Michael Landthaler; Scott W Menzies; Hubert Pehamberger; Domenico Piccolo; Harold S Rabinovitz; Roman Schiffner; Stefania Staibano; Wilhelm Stolz; Igor Bartenjev; Andreas Blum; Ralph Braun; Horacio Cabo; Paolo Carli; Vincenzo De Giorgi; Matthew G Fleming; James M Grichnik; Caron M Grin; Allan C Halpern; Robert Johr; Brian Katz; Robert O Kenet; Harald Kittler; Jürgen Kreusch; Josep Malvehy; Giampiero Mazzocchetti; Margaret Oliviero; Fezal Ozdemir; Ketty Peris; Roberto Perotti; Ana Perusquia; Maria Antonietta Pizzichetta; Susana Puig; Babar Rao; Pietro Rubegni; Toshiaki Saida; Massimiliano Scalvenzi; Stefania Seidenari; Ignazio Stanganelli; Masaru Tanaka; Karin Westerhoff; Ingrid H Wolf; Otto Braun-Falco; Helmut Kerl; Takeji Nishikawa; Klaus Wolff; Alfred W Kopf
Journal:  J Am Acad Dermatol       Date:  2003-05       Impact factor: 11.527

Review 3.  Early diagnosis of melanoma: what is the impact of dermoscopy?

Authors:  Giuseppe Argenziano; Giuseppe Albertini; Fabio Castagnetti; Barbara De Pace; Vito Di Lernia; Caterina Longo; Giovanni Pellacani; Simonetta Piana; Cinzia Ricci; Iris Zalaudek
Journal:  Dermatol Ther       Date:  2012 Sep-Oct       Impact factor: 2.851

4.  Melanoma surveillance in "high-risk" individuals.

Authors:  Allan C Halpern; Michael A Marchetti; Ashfaq A Marghoob
Journal:  JAMA Dermatol       Date:  2014-08       Impact factor: 10.282

5.  Comparison of the accuracy of human readers versus machine-learning algorithms for pigmented skin lesion classification: an open, web-based, international, diagnostic study.

Authors:  Philipp Tschandl; Noel Codella; Bengü Nisa Akay; Giuseppe Argenziano; Ralph P Braun; Horacio Cabo; David Gutman; Allan Halpern; Brian Helba; Rainer Hofmann-Wellenhof; Aimilios Lallas; Jan Lapins; Caterina Longo; Josep Malvehy; Michael A Marchetti; Ashfaq Marghoob; Scott Menzies; Amanda Oakley; John Paoli; Susana Puig; Christoph Rinner; Cliff Rosendahl; Alon Scope; Christoph Sinz; H Peter Soyer; Luc Thomas; Iris Zalaudek; Harald Kittler
Journal:  Lancet Oncol       Date:  2019-06-12       Impact factor: 41.316

Review 6.  Transforming Dermatologic Imaging for the Digital Era: Metadata and Standards.

Authors:  Liam J Caffery; David Clunie; Clara Curiel-Lewandrowski; Josep Malvehy; H Peter Soyer; Allan C Halpern
Journal:  J Digit Imaging       Date:  2018-08       Impact factor: 4.056

7.  Human-computer collaboration for skin cancer recognition.

Authors:  Philipp Tschandl; Christoph Rinner; Zoe Apalla; Giuseppe Argenziano; Noel Codella; Allan Halpern; Monika Janda; Aimilios Lallas; Caterina Longo; Josep Malvehy; John Paoli; Susana Puig; Cliff Rosendahl; H Peter Soyer; Iris Zalaudek; Harald Kittler
Journal:  Nat Med       Date:  2020-06-22       Impact factor: 53.440

8.  The "ugly duckling" sign: agreement between observers.

Authors:  Alon Scope; Stephen W Dusza; Allan C Halpern; Harold Rabinovitz; Ralph P Braun; Iris Zalaudek; Giuseppe Argenziano; Ashfaq A Marghoob
Journal:  Arch Dermatol       Date:  2008-01

9.  Both short-term and long-term dermoscopy monitoring is useful in detecting melanoma in patients with multiple atypical nevi.

Authors:  E Moscarella; I Tion; I Zalaudek; A Lallas; A Kyrgidis; C Longo; M Lombardi; M Raucci; R Satta; R Alfano; G Argenziano
Journal:  J Eur Acad Dermatol Venereol       Date:  2016-07-16       Impact factor: 6.166

10.  Diagnostic accuracy of content-based dermatoscopic image retrieval with deep classification features.

Authors:  P Tschandl; G Argenziano; M Razmara; J Yap
Journal:  Br J Dermatol       Date:  2018-10-17       Impact factor: 9.302

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  12 in total

1.  InSiNet: a deep convolutional approach to skin cancer detection and segmentation.

Authors:  Hatice Catal Reis; Veysel Turk; Kourosh Khoshelham; Serhat Kaya
Journal:  Med Biol Eng Comput       Date:  2022-01-13       Impact factor: 2.602

2.  The Application of Differing Machine Learning Algorithms and Their Related Performance in Detecting Skin Cancers and Melanomas.

Authors:  Suboh Alkhushayni; Du'a Al-Zaleq; Luwis Andradi; Patrick Flynn
Journal:  J Skin Cancer       Date:  2022-05-04

3.  The Role of DICOM in Artificial Intelligence for Skin Disease.

Authors:  Liam J Caffery; Veronica Rotemberg; Jochen Weber; H Peter Soyer; Josep Malvehy; David Clunie
Journal:  Front Med (Lausanne)       Date:  2021-02-10

4.  Novel strategy for applying hierarchical density-based spatial clustering of applications with noise towards spectroscopic analysis and detection of melanocytic lesions.

Authors:  Jason Yuan Ye; Christopher Yu; Tiffany Husman; Bryan Chen; Aryaman Trikala
Journal:  Melanoma Res       Date:  2021-12-01       Impact factor: 3.599

5.  Scale-Aware Transformers for Diagnosing Melanocytic Lesions.

Authors:  Wenjun Wu; Sachin Mehta; Shima Nofallah; Stevan Knezevich; Caitlin J May; Oliver H Chang; Joann G Elmore; Linda G Shapiro
Journal:  IEEE Access       Date:  2021-12-06       Impact factor: 3.367

6.  Melanoma Classification Using a Novel Deep Convolutional Neural Network with Dermoscopic Images.

Authors:  Ranpreet Kaur; Hamid GholamHosseini; Roopak Sinha; Maria Lindén
Journal:  Sensors (Basel)       Date:  2022-02-02       Impact factor: 3.576

7.  Cancer-Net SCa: tailored deep neural network designs for detection of skin cancer from dermoscopy images.

Authors:  James Ren Hou Lee; Maya Pavlova; Mahmoud Famouri; Alexander Wong
Journal:  BMC Med Imaging       Date:  2022-08-09       Impact factor: 2.795

8.  Neural network classifiers for images of genetic conditions with cutaneous manifestations.

Authors:  Dat Duong; Rebekah L Waikel; Ping Hu; Cedrik Tekendo-Ngongang; Benjamin D Solomon
Journal:  HGG Adv       Date:  2021-08-20

9.  The Future of Precision Prevention for Advanced Melanoma.

Authors:  Katie J Lee; Brigid Betz-Stablein; Mitchell S Stark; Monika Janda; Aideen M McInerney-Leo; Liam J Caffery; Nicole Gillespie; Tatiane Yanes; H Peter Soyer
Journal:  Front Med (Lausanne)       Date:  2022-01-17

10.  Detecting 17 fine-grained dental anomalies from panoramic dental radiography using artificial intelligence.

Authors:  Sangyeon Lee; Donghyun Kim; Ho-Gul Jeong
Journal:  Sci Rep       Date:  2022-03-25       Impact factor: 4.379

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