Literature DB >> 33508234

De novo TRIM8 variants impair its protein localization to nuclear bodies and cause developmental delay, epilepsy, and focal segmental glomerulosclerosis.

Patricia L Weng1, Amar J Majmundar2, Kamal Khan3, Tze Y Lim4, Shirlee Shril2, Gina Jin4, John Musgrove5, Minxian Wang6, Dina F Ahram4, Vimla S Aggarwal7, Louise E Bier8, Erin L Heinzen8, Ana C Onuchic-Whitford9, Nina Mann2, Florian Buerger2, Ronen Schneider2, Konstantin Deutsch2, Thomas M Kitzler2, Verena Klämbt2, Amy Kolb2, Youying Mao2, Christelle Moufawad El Achkar10, Adele Mitrotti4, Jeremiah Martino4, Bodo B Beck11, Janine Altmüller12, Marcus R Benz13, Shoji Yano14, Mohamad A Mikati15, Talha Gunduz15, Heidi Cope16, Vandana Shashi16, Howard Trachtman17, Monica Bodria18, Gianluca Caridi18, Isabella Pisani19, Enrico Fiaccadori19, Asmaa S AbuMaziad20, Julian A Martinez-Agosto21, Ora Yadin1, Jonathan Zuckerman22, Arang Kim23, Ulrike John-Kroegel24, Amanda V Tyndall25, Jillian S Parboosingh25, A Micheil Innes25, Agnieszka Bierzynska26, Ania B Koziell27, Mordi Muorah28, Moin A Saleem26, Julia Hoefele29, Korbinian M Riedhammer30, Ali G Gharavi4, Vaidehi Jobanputra31, Emma Pierce-Hoffman32, Eleanor G Seaby32, Anne O'Donnell-Luria33, Heidi L Rehm32, Shrikant Mane34, Vivette D D'Agati35, Martin R Pollak36, Gian Marco Ghiggeri18, Richard P Lifton37, David B Goldstein8, Erica E Davis38, Friedhelm Hildebrandt39, Simone Sanna-Cherchi40.   

Abstract

Focal segmental glomerulosclerosis (FSGS) is the main pathology underlying steroid-resistant nephrotic syndrome (SRNS) and a leading cause of chronic kidney disease. Monogenic forms of pediatric SRNS are predominantly caused by recessive mutations, while the contribution of de novo variants (DNVs) to this trait is poorly understood. Using exome sequencing (ES) in a proband with FSGS/SRNS, developmental delay, and epilepsy, we discovered a nonsense DNV in TRIM8, which encodes the E3 ubiquitin ligase tripartite motif containing 8. To establish whether TRIM8 variants represent a cause of FSGS, we aggregated exome/genome-sequencing data for 2,501 pediatric FSGS/SRNS-affected individuals and 48,556 control subjects, detecting eight heterozygous TRIM8 truncating variants in affected subjects but none in control subjects (p = 3.28 × 10-11). In all six cases with available parental DNA, we demonstrated de novo inheritance (p = 2.21 × 10-15). Reverse phenotyping revealed neurodevelopmental disease in all eight families. We next analyzed ES from 9,067 individuals with epilepsy, yielding three additional families with truncating TRIM8 variants. Clinical review revealed FSGS in all. All TRIM8 variants cause protein truncation clustering within the last exon between residues 390 and 487 of the 551 amino acid protein, indicating a correlation between this syndrome and loss of the TRIM8 C-terminal region. Wild-type TRIM8 overexpressed in immortalized human podocytes and neuronal cells localized to nuclear bodies, while constructs harboring patient-specific variants mislocalized diffusely to the nucleoplasm. Co-localization studies demonstrated that Gemini and Cajal bodies frequently abut a TRIM8 nuclear body. Truncating TRIM8 DNVs cause a neuro-renal syndrome via aberrant TRIM8 localization, implicating nuclear bodies in FSGS and developmental brain disease.
Copyright © 2021 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  FSGS; SRNS; TRIM8; epilepsy; genomics; monogenic; nuclear body

Mesh:

Substances:

Year:  2021        PMID: 33508234      PMCID: PMC7895901          DOI: 10.1016/j.ajhg.2021.01.008

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  53 in total

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Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

Review 2.  Exploring the genetic basis of early-onset chronic kidney disease.

Authors:  Asaf Vivante; Friedhelm Hildebrandt
Journal:  Nat Rev Nephrol       Date:  2016-01-11       Impact factor: 28.314

3.  Parental age and stillbirth: a population-based cohort of nearly 10 million California deliveries from 1991 to 2011.

Authors:  Jonathan A Mayo; Ying Lu; David K Stevenson; Gary M Shaw; Michael L Eisenberg
Journal:  Ann Epidemiol       Date:  2018-12-21       Impact factor: 3.797

Review 4.  Hereditary proteinuria syndromes and mechanisms of proteinuria.

Authors:  Karl Tryggvason; Jaakko Patrakka; Jorma Wartiovaara
Journal:  N Engl J Med       Date:  2006-03-30       Impact factor: 91.245

Review 5.  Biogenesis and function of nuclear bodies.

Authors:  Yuntao S Mao; Bin Zhang; David L Spector
Journal:  Trends Genet       Date:  2011-06-15       Impact factor: 11.639

6.  Podocyte depletion causes glomerulosclerosis: diphtheria toxin-induced podocyte depletion in rats expressing human diphtheria toxin receptor transgene.

Authors:  Bryan L Wharram; Meera Goyal; Jocelyn E Wiggins; Silja K Sanden; Sabiha Hussain; Wanda E Filipiak; Thomas L Saunders; Robert C Dysko; Kenji Kohno; Lawrence B Holzman; Roger C Wiggins
Journal:  J Am Soc Nephrol       Date:  2005-08-17       Impact factor: 10.121

7.  De Novo Truncating Mutation of TRIM8 Causes Early-Onset Epileptic Encephalopathy.

Authors:  Yasunari Sakai; Ryoko Fukai; Yuki Matsushita; Noriko Miyake; Hirotomo Saitsu; Satoshi Akamine; Michiko Torio; Momoko Sasazuki; Yoshito Ishizaki; Masafumi Sanefuji; Hiroyuki Torisu; Chad A Shaw; Naomichi Matsumoto; Toshiro Hara
Journal:  Ann Hum Genet       Date:  2016-07       Impact factor: 1.670

8.  Whole-genome sequencing of patients with rare diseases in a national health system.

Authors:  Ernest Turro; William J Astle; Karyn Megy; Stefan Gräf; Daniel Greene; Olga Shamardina; Hana Lango Allen; Alba Sanchis-Juan; Mattia Frontini; Chantal Thys; Jonathan Stephens; Rutendo Mapeta; Oliver S Burren; Kate Downes; Matthias Haimel; Salih Tuna; Sri V V Deevi; Timothy J Aitman; David L Bennett; Paul Calleja; Keren Carss; Mark J Caulfield; Patrick F Chinnery; Peter H Dixon; Daniel P Gale; Roger James; Ania Koziell; Michael A Laffan; Adam P Levine; Eamonn R Maher; Hugh S Markus; Joannella Morales; Nicholas W Morrell; Andrew D Mumford; Elizabeth Ormondroyd; Stuart Rankin; Augusto Rendon; Sylvia Richardson; Irene Roberts; Noemi B A Roy; Moin A Saleem; Kenneth G C Smith; Hannah Stark; Rhea Y Y Tan; Andreas C Themistocleous; Adrian J Thrasher; Hugh Watkins; Andrew R Webster; Martin R Wilkins; Catherine Williamson; James Whitworth; Sean Humphray; David R Bentley; Nathalie Kingston; Neil Walker; John R Bradley; Sofie Ashford; Christopher J Penkett; Kathleen Freson; Kathleen E Stirrups; F Lucy Raymond; Willem H Ouwehand
Journal:  Nature       Date:  2020-06-24       Impact factor: 49.962

9.  Nucleo-cytoplasmic trafficking of TRIM8, a novel oncogene, is involved in positive regulation of TNF induced NF-κB pathway.

Authors:  Dhanendra Tomar; Lakshmi Sripada; Paresh Prajapati; Rochika Singh; Arun Kumar Singh; Rajesh Singh
Journal:  PLoS One       Date:  2012-11-12       Impact factor: 3.240

10.  Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney.

Authors:  Rajasree Menon; Edgar A Otto; Austin Kokoruda; Jian Zhou; Zidong Zhang; Euisik Yoon; Yu-Chih Chen; Olga Troyanskaya; Jason R Spence; Matthias Kretzler; Cristina Cebrián
Journal:  Development       Date:  2018-08-30       Impact factor: 6.868

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  3 in total

1.  A novel de novo truncating TRIM8 variant associated with childhood-onset focal segmental glomerulosclerosis without epileptic encephalopathy: a case report.

Authors:  Yoko Shirai; Kenichiro Miura; Naoto Kaneko; Kiyonobu Ishizuka; Amane Endo; Taeko Hashimoto; Shoichiro Kanda; Yutaka Harita; Motoshi Hattori
Journal:  BMC Nephrol       Date:  2021-12-20       Impact factor: 2.388

2.  Two Children With Steroid-Resistant Significant Proteinuria Due to Nonsense Mutations of the TRIM8 Gene: A Case Report and Literature Review.

Authors:  Xiaojie Li; Yaqin Wei; Meiqiu Wang; Lili Jia; Zhuo Shi; Xiao Yang; Tao Ju; Qianhuining Kuang; Zhengkun Xia; Chunlin Gao
Journal:  Front Pediatr       Date:  2022-07-12       Impact factor: 3.569

3.  TTC5 syndrome: Clinical and molecular spectrum of a severe and recognizable condition.

Authors:  Luciana Musante; Flavio Faletra; Kolja Meier; Hoda Tomoum; Paria Najarzadeh Torbati; Edward Blair; Sally North; Jutta Gärtner; Susann Diegmann; Mehran Beiraghi Toosi; Farah Ashrafzadeh; Ehsan Ghayoor Karimiani; David Murphy; Flora Maria Murru; Caterina Zanus; Andrea Magnolato; Martina La Bianca; Agnese Feresin; Giorgia Girotto; Paolo Gasparini; Paola Costa; Marco Carrozzi
Journal:  Am J Med Genet A       Date:  2022-06-07       Impact factor: 2.578

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