Literature DB >> 33506330

The Semi-Enzymatic Origin of Metabolic Pathways: Inferring a Very Early Stage of the Evolution of Life.

Arturo Becerra1.   

Abstract

The early evolution of life is a period with many important events with a lot of big and open questions. One of them is the evolution of metabolic pathways, which means the origin and assembly of enzymes that act together. The retrograde hypothesis was the first attempt to explain the origin and evolutionary history of metabolic pathways; Norman Horowitz developed this first significant hypothesis. This idea was followed by relevant proposals developed by Sam Granick, who proposed the "forward direction hypothesis," and then the successful idea of "Patchwork" assembly proposed independently by Martynas Yčas and Roy Jensen. Since then, a few new hypotheses were proposed; one of the most influential was made by Antonio Lazcano and Stanley Miller in the Journal Molecular Evolution, the "semi-enzymatic origin" of metabolic pathways. This article was cited more than 160 times, including in most papers published about the early evolution of metabolism, placing it as influential work in the field. The ideas proposed in this work and their effects on studying the origin and early evolution of life are analyzed.

Keywords:  Early evolution of life; Evolution of metabolism; Semi-enzymatic synthesis

Year:  2021        PMID: 33506330     DOI: 10.1007/s00239-021-09994-0

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  29 in total

Review 1.  Planetary biology--paleontological, geological, and molecular histories of life.

Authors:  Steven A Benner; M Daniel Caraco; J Michael Thomson; Eric A Gaucher
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

2.  A phylogenetic approach to the early evolution of autotrophy: the case of the reverse TCA and the reductive acetyl-CoA pathways.

Authors:  Arturo Becerra; Mario Rivas; Carlos García-Ferris; Antonio Lazcano; Juli Peretó
Journal:  Int Microbiol       Date:  2014-06       Impact factor: 2.479

Review 3.  The place of metabolism in the origin of life.

Authors:  Frank Al Anet
Journal:  Curr Opin Chem Biol       Date:  2004-12       Impact factor: 8.822

4.  On the Evolution of Biochemical Syntheses.

Authors:  N H Horowitz
Journal:  Proc Natl Acad Sci U S A       Date:  1945-06       Impact factor: 11.205

5.  Prebiological evolution and the physics of the origin of life.

Authors:  Luis Delaye; Antonio Lazcano
Journal:  Phys Life Rev       Date:  2005-01-20       Impact factor: 11.025

Review 6.  The evolution of gene duplications: classifying and distinguishing between models.

Authors:  Hideki Innan; Fyodor Kondrashov
Journal:  Nat Rev Genet       Date:  2010-01-06       Impact factor: 53.242

7.  An intermediate level of abstraction for computational systems chemistry.

Authors:  Jakob L Andersen; Christoph Flamm; Daniel Merkle; Peter F Stadler
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-12-28       Impact factor: 4.226

8.  Formamide as the main building block in the origin of nucleic acids.

Authors:  Giovanna Costanzo; Raffaele Saladino; Claudia Crestini; Fabiana Ciciriello; Ernesto Di Mauro
Journal:  BMC Evol Biol       Date:  2007-08-16       Impact factor: 3.260

9.  A network perspective on the evolution of metabolism by gene duplication.

Authors:  Juan Javier Díaz-Mejía; Ernesto Pérez-Rueda; Lorenzo Segovia
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

10.  Metabolic evolution of a deep-branching hyperthermophilic chemoautotrophic bacterium.

Authors:  Rogier Braakman; Eric Smith
Journal:  PLoS One       Date:  2014-02-05       Impact factor: 3.240

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  3 in total

1.  The Journal of Molecular Evolution Turns 50.

Authors:  Aaron D Goldman; David A Liberles
Journal:  J Mol Evol       Date:  2021-02-23       Impact factor: 2.395

2.  An open source computational workflow for the discovery of autocatalytic networks in abiotic reactions.

Authors:  Aayush Arya; Jessica Ray; Siddhant Sharma; Romulo Cruz Simbron; Alejandro Lozano; Harrison B Smith; Jakob Lykke Andersen; Huan Chen; Markus Meringer; Henderson James Cleaves
Journal:  Chem Sci       Date:  2022-03-23       Impact factor: 9.969

3.  The Role of Gene Duplication in the Divergence of Enzyme Function: A Comparative Approach.

Authors:  Alejandro Álvarez-Lugo; Arturo Becerra
Journal:  Front Genet       Date:  2021-07-14       Impact factor: 4.599

  3 in total

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