| Literature DB >> 33501772 |
William D Sieling1, Connor R Goldman1, Matthew Oberhardt2, Matthew Phillips3, Lyn Finelli3, Lisa Saiman1,4.
Abstract
BACKGROUND: Although the burden of influenza is well characterized, the burden of community-onset non-influenza respiratory viruses has not been systematically assessed. Understanding the severity and seasonality of non-influenza viruses, including human coronaviruses, will provide a better understanding of the overall disease burden from respiratory viruses that could better inform resource utilization for hospitals and highlight the value of preventative strategies, including vaccines.Entities:
Keywords: adenovirus; human coronaviruses; influenza; parainfluenza viruses; respiratory syncytial virus
Mesh:
Year: 2021 PMID: 33501772 PMCID: PMC8013984 DOI: 10.1111/irv.12842
Source DB: PubMed Journal: Influenza Other Respir Viruses ISSN: 1750-2640 Impact factor: 5.606
Selected characteristics of patients and detected respiratory viruses
|
Year 1 October 2017‐September 2018 N = 2043 |
Year 2 October 2018‐September 2019 N = 2189 |
Total N = 4232 | |
|---|---|---|---|
| Demographic characteristics | |||
| Age in years, n (%) | |||
| 18‐49 | 455 (22.3%) | 526 (24.0%) | 981 (23.2%) |
| 50‐64 | 542 (26.5%) | 555 (25.4%) | 1097 (25.9%) |
| 65‐79 | 534 (26.14%) | 626 (28.6%) | 1160 (27.4%) |
| 512 (25.1%) | 482 (22.0%) | 994 (23.5%) | |
| Mean age (range) | 63.5 (18‐110) | 62.3 (18‐104) | 62.8 (18‐110) |
| Female, n (%) | 1144 (56.0%) | 1247 (57.0%) | 2391 (56.5%) |
| Hospital, n (%) | |||
| A | 1322 (64.7%) | 1526 (69.7%) | 2848 (67.3%) |
| B | 644 (31.5%) | 583 (26.6%) | 1227 (29.0%) |
| C | 77 (3.8%) | 80 (3.7%) | 157 (3.7%) |
| Reside in zip codes, n (%) | |||
| 1181 (57.8%) | 1266 (57.8%) | 2447 (57.8%) | |
| Reside in zip codes, n (%) | |||
| <60% market share | 862 (42.2%) | 923 (42.2%) | 1785 (42.2%) |
| Respiratory viruses detected, | |||
| Influenza (all) | 503 (23.3%) | 401 (17.3%) | 904 (20.2%) |
| Influenza type AH3 | 270 (12.5%) | 161 (6.9%) | 431 (9.6%) |
| Influenza type AH1 | 48 (2.2%) | 215 (9.3%) | 263 (5.9%) |
| Influenza type B | 173 (8.0%) | 14 (0.6%) | 187 (4.2%) |
| Influenza A equivocal | 12 (0.6%) | 11 (0.5%) | 23 (0.5%) |
| Rhinovirus/enterovirus | 765 (35.5%) | 902 (38.8%) | 1667 (37.2%) |
| Human coronavirus (all) | 277 (12.8%) | 366 (15.7%) | 643 (14.4%) |
| Coronavirus type 229E | 20 (0.9%) | 126 (5.4%) | 146 (3.3%) |
| Coronavirus type HKU1 | 119 (5.5%) | 30 (1.3%) | 149 (3.3%) |
| Coronavirus type NL63 | 68 (3.2%) | 59 (2.5%) | 127 (2.8%) |
| Coronavirus type OC43 | 70 (3.2) | 151 (6.5%) | 221 (4.9%) |
| Respiratory syncytial virus | 198 (9.2%) | 243 (10.5%) | 441 (9.8%) |
| Parainfluenza viruses 1‐4 | 193 (8.9%) | 175 (7.5%) | 368 (8.2%) |
| Human metapneumovirus | 182 (8.4%) | 181 (7.8%) | 363 (8.1%) |
| Adenovirus | 39 (1.8%) | 54 (2.3%) | 93 (2.1%) |
Represents eight unique zip codes used for population‐based incidence estimate.
Represents 130 and 133 unique zip codes in Year 1 and Year 2, respectively.
Includes specimens with more than one virus detected.
FIGURE 1Epidemiologic Curve of Coronaviruses from October 2017 to October 2019. The number of patients hospitalized with the human coronaviruses (CoV) 229E, HKU1, NL63, and OC43 during the study period are shown. Human coronavirus HKU1 was most common during the winter months of year 1, and human coronavirus 229E was most common during the winter months of year 2. Human coronavirus 229E was not detected until March 2018
FIGURE 2Year 1 (Figure a) and Year 2 (Figure b) Comparative Population‐based Incidence of Respiratory Viruses by Age Strata. The incidence of each virus per 100 000 persons (95% confidence intervals) overall and by the three age strata 18‐49, 50‐64, 65‐79, and >80 years of age are shown for year 1 and year 2. For both years and for every virus, the population‐based incidence was highest for those >80 years of age
Morbidity and mortality associated with detection of different respiratory viruses
| Virus |
Patients n (%) | Median LOS, days (IQR) |
ICU Admission n (%) | ICU Median LOS, days (IQR) |
Crude Mortality n (%) | Median LOS of patients who died, days (IQR) |
|---|---|---|---|---|---|---|
| All influenza | 904 (20.2%) | 3.9 (2.1, 7.1) | 104 (11.5) | 4.3 (2.2, 8.0) | 29 (3.3) | 8.7 (5.5, 15.7) |
| Flu A (H3) | 431 (9.6%) | 4.0 (2.2, 7.1) | 47 (10.9) | 3.8 (2.2, 6.8) | 15 (3.5) | 6.2 (5.1, 19.9) |
| Flu A (H1) | 263 (5.9%) | 3.4 (2.1, 6.9) | 42 (16.0) | 5.5 (2.2, 9.9) | 9 (3.4) | 8.5 (8.3, 19.8) |
| Flu B | 187 (4.2%) | 4.2 (2.1, 7.5) | 15 (8.0) | 3.5 (2.3, 6.2) | 6 (3.2) | 10.9 (10.0, 14.2) |
| RV/EV | 1667 (37.2%) | 4.1 (2.3, 7.6) | 225 (13.5) | 3.8 (2.1, 7.7) | 54 (3.2) | 6.6 (4.2, 18.4) |
| CoV229E | 146 (3.3%) | 4.4 (2.3, 8.1) | 32 (21.9) | 3.6 (1.7, 10.8) | 18 (12.3) | 11.0 (5.5, 24.2) |
| CoVHKU1 | 149 (3.3%) | 4.3 (2.3, 8.7) | 29 (19.5) | 3.7 (1.9, 7.8) | 14 (9.4) | 7.8 (3.8, 12.1) |
| CoVNL63 | 127 (2.8%) | 5.1 (3.0, 8.9) | 26 (20.5) | 3.3 (2.0, 7.6) | 5 (3.9) | 13.2 (11.3, 24.5) |
| CoVOC43 | 221 (4.9%) | 4.0 (2.4, 7.8) | 35 (15.8) | 4.8 (2.0, 7.6) | 8 (3.6) | 8.1 (4.8, 11.6) |
| RSV | 441 (9.8%) | 4.4 (2.9, 8.3) | 71 (16.1) | 4.0 (2.1, 8.0) | 23 (5.2) | 8.1 (3.7, 25.5) |
| PIV | 368 (8.2%) | 4.2 (2.3, 8.1) | 55 (14.9) | 5.2 (2.6, 9.7) | 18 (4.9) | 10.8 (5.0, 18.9) |
| HMPV | 363 (8.1%) | 4.8 (2.7, 8.6) | 60 (16.5) | 4.4 (2.0, 8.5) | 14 (3.9) | 12.0 (8.6, 19.9) |
| AV | 93 (2.1%) | 5.1 (2.7, 11.2) | 21 (22.6) | 6.5 (3.6, 13.6) | 7 (7.5) | 38.0 (11.2, 39.0) |
| All | 4232 (100%) | 4.2 (2.3, 7.8) | 609 (14.4) | 4.0 (2.1, 8.4) | 171 (4.0) | 9.7 (5.0, 19.8) |
Abbreviations: AV, adenovirus; CoV, coronavirus; Flu, influenza; HMPV, human metapneumovirus; ICU, intensive care unit; IQR, interquartile range; LOS, length of stay; PIV, parainfluenza viruses; RSV, respiratory syncytial virus; RV/EV, rhinoviruses/enteroviruses.
Includes patients reported to have equivocal detection of influenza A.
Includes patients with more than one virus detected.