Literature DB >> 33500497

Proteome-wide profiling and mapping of post translational modifications in human hearts.

Navratan Bagwan1, Henrik H El Ali1, Alicia Lundby2,3.   

Abstract

Post translational modifications (PTMs) are covalent modifications of proteins that can range from small chemical modifications to addition of entire proteins. PTMs contribute to regulation of protein function and thereby greatly increase the functional diversity of the proteome. In the heart, a few well-studied PTMs, such as phosphorylation and glycosylation, are known to play essential roles for cardiac function. Yet, only a fraction of the ~ 300 known PTMs have been studied in a cardiac context. Here we investigated the proteome-wide map of PTMs present in human hearts by utilizing high-resolution mass spectrometry measurements and a suite of PTM identification algorithms. Our approach led to identification of more than 150 different PTMs across three of the chambers in human hearts. This finding underscores that decoration of cardiac proteins by PTMs is much more diverse than hitherto appreciated and provides insights in cardiac protein PTMs not yet studied. The results presented serve as a catalogue of which PTMs are present in human hearts and outlines the particular protein and the specific amino acid modified, and thereby provides a detail-rich resource for exploring protein modifications in human hearts beyond the most studied PTMs.

Entities:  

Year:  2021        PMID: 33500497      PMCID: PMC7838296          DOI: 10.1038/s41598-021-81986-y

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  42 in total

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Review 3.  [Modification of cysteine residues for mass spectrometry-based proteomic analysis: facts and artifacts].

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4.  Effect of phenylalanine on the fragmentation of deprotonated peptides.

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Journal:  J Am Soc Mass Spectrom       Date:  2002-10       Impact factor: 3.109

5.  Extracting Accurate Precursor Information for Tandem Mass Spectra by RawConverter.

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Journal:  Anal Chem       Date:  2015-11-04       Impact factor: 6.986

6.  Systematic LC-MS analysis of labile post-translational modifications in complex mixtures.

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7.  MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics.

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Journal:  Nat Methods       Date:  2017-04-10       Impact factor: 28.547

8.  Aberrant Glycosylation in the Left Ventricle and Plasma of Rats with Cardiac Hypertrophy and Heart Failure.

Authors:  Chiaki Nagai-Okatani; Naoto Minamino
Journal:  PLoS One       Date:  2016-06-09       Impact factor: 3.240

9.  Quantitative Proteomics of Human Heart Samples Collected In Vivo Reveal the Remodeled Protein Landscape of Dilated Left Atrium Without Atrial Fibrillation.

Authors:  Nora Linscheid; Pi Camilla Poulsen; Ida Dalgaard Pedersen; Emilie Gregers; Jesper Hastrup Svendsen; Morten Salling Olesen; Jesper Velgaard Olsen; Mario Delmar; Alicia Lundby
Journal:  Mol Cell Proteomics       Date:  2020-04-14       Impact factor: 5.911

10.  PTM-Shepherd: Analysis and Summarization of Post-Translational and Chemical Modifications From Open Search Results.

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Journal:  Mol Cell Proteomics       Date:  2020-12-11       Impact factor: 5.911

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  4 in total

1.  Thermal Proteome Profiling Reveals the O-GlcNAc-Dependent Meltome.

Authors:  Dustin T King; Jesús E Serrano-Negrón; Yanping Zhu; Christopher L Moore; Matthew D Shoulders; Leonard J Foster; David J Vocadlo
Journal:  J Am Chem Soc       Date:  2022-03-01       Impact factor: 15.419

2.  Maternal serum proteomic profiles of pregnant women with type 1 diabetes.

Authors:  Marzena Gajecka; Ewa Wender-Ozegowska; Paweł Gutaj; Jan Matysiak; Eliza Matuszewska; Katarzyna Jaskiewicz; Dorota Kamińska; Agata Światły-Błaszkiewicz; Tomasz Szczapa; Anastasia Kalantarova
Journal:  Sci Rep       Date:  2022-05-24       Impact factor: 4.996

3.  Autoantibodies against specific post-translationally modified proteins are present in patients with lupus and associate with major neuropsychiatric manifestations.

Authors:  Rory C Monahan; Michelle D van den Beukel; Nicole V Borggreven; Rolf Fronczek; Tom W J Huizinga; Margreet Kloppenburg; Gerda M Steup-Beekman; Leendert A Trouw
Journal:  RMD Open       Date:  2022-04

4.  An atlas of posttranslational modifications on RNA binding proteins.

Authors:  Whitney E England; Jingtian Wang; Siwei Chen; Pierre Baldi; Ryan A Flynn; Robert C Spitale
Journal:  Nucleic Acids Res       Date:  2022-05-06       Impact factor: 19.160

  4 in total

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