Literature DB >> 15174123

Unimod: Protein modifications for mass spectrometry.

David M Creasy1, John S Cottrell.   

Abstract

Unimod is a database of protein modifications for use in mass spectrometry applications, especially protein identification and de novo sequencing. It contains accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by both natural and artificial modifications.

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Year:  2004        PMID： 15174123     DOI： 10.1002/pmic.200300744

Source DB:  PubMed          Journal:  Proteomics        ISSN： 1615-9853            Impact factor:   3.984


  104 in total

1.  Fast multi-blind modification search through tandem mass spectrometry.

Authors:  Seungjin Na; Nuno Bandeira; Eunok Paek
Journal:  Mol Cell Proteomics       Date:  2011-12-20       Impact factor: 5.911

Review 2.  Post-translational modification of cardiac proteasomes: functional delineation enabled by proteomics.

Authors:  Sarah B Scruggs; Nobel C Zong; Ding Wang; Enrico Stefani; Peipei Ping
Journal:  Am J Physiol Heart Circ Physiol       Date:  2012-04-20       Impact factor: 4.733

3.  Software Analysis of Uncorrelated MS1 Peaks for Discovery of Post-Translational Modifications.

Authors:  Bruce D Pascal; Graham M West; Catherina Scharager-Tapia; Ricardo Flefil; Tina Moroni; Pablo Martinez-Acedo; Patrick R Griffin; Anthony C Carvalloza
Journal:  J Am Soc Mass Spectrom       Date:  2015-08-12       Impact factor: 3.109

4.  Opening a SWATH Window on Posttranslational Modifications: Automated Pursuit of Modified Peptides.

Authors:  Andrew Keller; Samuel L Bader; Ulrike Kusebauch; David Shteynberg; Leroy Hood; Robert L Moritz
Journal:  Mol Cell Proteomics       Date:  2015-12-24       Impact factor: 5.911

5.  Protein identification by spectral networks analysis.

Authors:  Nuno Bandeira; Dekel Tsur; Ari Frank; Pavel A Pevzner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-02       Impact factor: 11.205

6.  Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation.

Authors:  Nitin Gupta; Stephen Tanner; Navdeep Jaitly; Joshua N Adkins; Mary Lipton; Robert Edwards; Margaret Romine; Andrei Osterman; Vineet Bafna; Richard D Smith; Pavel A Pevzner
Journal:  Genome Res       Date:  2007-08-09       Impact factor: 9.043

7.  Mass spectrometry-based proteomics and peptidomics for biomarker discovery in neurodegenerative diseases.

Authors:  Xin Wei; Lingjun Li
Journal:  Int J Clin Exp Pathol       Date:  2008-06-20

8.  In-depth analysis of tandem mass spectrometry data from disparate instrument types.

Authors:  Robert J Chalkley; Peter R Baker; Katalin F Medzihradszky; Aenoch J Lynn; A L Burlingame
Journal:  Mol Cell Proteomics       Date:  2008-07-24       Impact factor: 5.911

9.  ProForma: A Standard Proteoform Notation.

Authors:  Richard D LeDuc; Veit Schwämmle; Michael R Shortreed; Anthony J Cesnik; Stefan K Solntsev; Jared B Shaw; Maria J Martin; Juan A Vizcaino; Emanuele Alpi; Paul Danis; Neil L Kelleher; Lloyd M Smith; Ying Ge; Jeffrey N Agar; Julia Chamot-Rooke; Joseph A Loo; Ljiljana Pasa-Tolic; Yury O Tsybin
Journal:  J Proteome Res       Date:  2018-02-14       Impact factor: 4.466

10.  NemR is a bleach-sensing transcription factor.

Authors:  Michael J Gray; Wei-Yun Wholey; Benjamin W Parker; Minwook Kim; Ursula Jakob
Journal:  J Biol Chem       Date:  2013-03-27       Impact factor: 5.157
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