Literature DB >> 33500478

Relevance of ddRADseq method for species and population delimitation of closely related and widely distributed wolf spiders (Araneae, Lycosidae).

Vladislav Ivanov1, Yuri Marusik2,3, Julien Pétillon4, Marko Mutanen5.   

Abstract

Although species delimitation is often controversial, emerging DNA-based and classical morphology-based methods are rarely compared using large-scale samplings, even less in the case of widely distributed species that have distant, allopatric populations. In the current study, we examined species boundaries within two wolf spider species of the genus Pardosa (Araneae, Lycosidae), P. riparia and P. palustris. Wolf spiders constitute an excellent model for testing the relevance of traditional vs. modern methods in species and population delimitation because several closely related species are distributed over cross-continental geographic ranges. Allopatric populations of the two Pardosa species were sampled across Europe to Far East Russia (latitudinal range > 150°) and several dozen individuals were studied using morphological characters (morphometry of three measures for both sexes, plus five in males only and two in females only), DNA barcoding (COI sequencing) and double-digest restriction site associated DNA sequencing (ddRADseq). The results obtained allow for changing the taxonomic status of two Far East Russian populations to subspecies and ddRADseq proved to be a powerful tool for taxonomic research despite scarce sampling and inherent subjectivity of species delimitation in allopatry. Overall, this study pleads for both multi-criteria and more population-based studies in taxonomy.

Entities:  

Year:  2021        PMID: 33500478      PMCID: PMC7838170          DOI: 10.1038/s41598-021-81788-2

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  73 in total

Review 1.  Ballooning dispersal using silk: world fauna, phylogenies, genetics and models.

Authors:  J R Bell; D A Bohan; E M Shaw; G S Weyman
Journal:  Bull Entomol Res       Date:  2005-04       Impact factor: 1.750

2.  Phylogenetic reconstruction of the wolf spiders (Araneae: Lycosidae) using sequences from the 12S rRNA, 28S rRNA, and NADH1 genes: implications for classification, biogeography, and the evolution of web building behavior.

Authors:  Nicholas P Murphy; Volker W Framenau; Stephen C Donnellan; Mark S Harvey; Yung-Chul Park; Andrew D Austin
Journal:  Mol Phylogenet Evol       Date:  2006-03       Impact factor: 4.286

3.  Divergence and diversity: lessons from an arctic-alpine distribution (Pardosa saltuaria group, Lycosidae).

Authors:  Christoph Muster; Thomas U Berendonk
Journal:  Mol Ecol       Date:  2006-09       Impact factor: 6.185

4.  Untangling taxonomy: a DNA barcode reference library for Canadian spiders.

Authors:  Gergin A Blagoev; Jeremy R deWaard; Sujeevan Ratnasingham; Stephanie L deWaard; Liuqiong Lu; James Robertson; Angela C Telfer; Paul D N Hebert
Journal:  Mol Ecol Resour       Date:  2015-07-26       Impact factor: 7.090

5.  Quartet inference from SNP data under the coalescent model.

Authors:  Julia Chifman; Laura Kubatko
Journal:  Bioinformatics       Date:  2014-08-07       Impact factor: 6.937

6.  Information Dropout Patterns in Restriction Site Associated DNA Phylogenomics and a Comparison with Multilocus Sanger Data in a Species-Rich Moth Genus.

Authors:  Kyung Min Lee; Sami M Kivelä; Vladislav Ivanov; Axel Hausmann; Lauri Kaila; Niklas Wahlberg; Marko Mutanen
Journal:  Syst Biol       Date:  2018-11-01       Impact factor: 15.683

7.  Assessing the utility of whole genome amplified DNA for next-generation molecular ecology.

Authors:  Christopher Blair; C Ryan Campbell; Anne D Yoder
Journal:  Mol Ecol Resour       Date:  2015-02-08       Impact factor: 7.090

8.  Introgression and phenotypic assimilation in Zimmerius flycatchers (Tyrannidae): population genetic and phylogenetic inferences from genome-wide SNPs.

Authors:  Frank E Rheindt; Matthew K Fujita; Peter R Wilton; Scott V Edwards
Journal:  Syst Biol       Date:  2013-12-04       Impact factor: 15.683

9.  Arctic-alpine distributions--metapopulations on a continental scale?

Authors:  Christoph Muster; Wayne P Maddison; Stefan Uhlmann; Thomas U Berendonk; Alfried P Vogler
Journal:  Am Nat       Date:  2009-03       Impact factor: 3.926

10.  Spider phylogenomics: untangling the Spider Tree of Life.

Authors:  Nicole L Garrison; Juanita Rodriguez; Ingi Agnarsson; Jonathan A Coddington; Charles E Griswold; Christopher A Hamilton; Marshal Hedin; Kevin M Kocot; Joel M Ledford; Jason E Bond
Journal:  PeerJ       Date:  2016-02-23       Impact factor: 2.984

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  1 in total

1.  Island hoppers: Integrative taxonomic revision of Hogna wolf spiders (Araneae, Lycosidae) endemic to the Madeira islands with description of a new species.

Authors:  Luís C Crespo; Isamberto Silva; Alba Enguídanos; Pedro Cardoso; Miquel Arnedo
Journal:  Zookeys       Date:  2022-02-16       Impact factor: 1.546

  1 in total

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