Literature DB >> 33499295

The Structural Properties of Odorants Modulate Their Association to Human Odorant Binding Protein.

Tarsila G Castro1, Carla Silva1, Teresa Matamá1, Artur Cavaco-Paulo1.   

Abstract

The binding of known odorant molecules to the human odorant-binding protein (hOBP) was evaluated in silico. Docking experiments elucidate the preferable binding site and binding affinity of odorant molecules to hOBP. The physicochemical properties molecular weight (MW), vapor pressure (Vp), hydrophobicity level (logP), number of double bonds (NºDB), degree of unsaturation (DoU) and the chemical classification, were selected for the study of odorant modulation. Here, these properties were analyzed concerning 30 pleasant and 30 unpleasant odorants, chosen to represent a wide variety of compounds and to determine their influence on the binding energy to hOBP. Our findings indicate that MW, logP and Vp are the most important odorant variables, directly correlated to odorant-binding energies (DGbinding) towards hOBP. Understanding how the odorants behave when complexed with the OBP in human olfaction opens new possibilities for the development of future biotechnological applications, including sensory devices, medical diagnosis, among others.

Entities:  

Keywords:  human odorant-binding protein; molecular docking; molecular dynamics simulations; odorants; virtual screening

Year:  2021        PMID: 33499295      PMCID: PMC7912024          DOI: 10.3390/biom11020145

Source DB:  PubMed          Journal:  Biomolecules        ISSN: 2218-273X


  29 in total

Review 1.  Mammalian odorant binding proteins.

Authors:  M Tegoni; P Pelosi; F Vincent; S Spinelli; V Campanacci; S Grolli; R Ramoni; C Cambillau
Journal:  Biochim Biophys Acta       Date:  2000-10-18

2.  Validation of the GROMOS 54A7 Force Field with Respect to β-Peptide Folding.

Authors:  Wei Huang; Zhixiong Lin; Wilfred F van Gunsteren
Journal:  J Chem Theory Comput       Date:  2011-04-20       Impact factor: 6.006

3.  P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation.

Authors:  Berk Hess
Journal:  J Chem Theory Comput       Date:  2008-01       Impact factor: 6.006

Review 4.  Structure and biotechnological applications of odorant-binding proteins.

Authors:  Paolo Pelosi; Rosa Mastrogiacomo; Immacolata Iovinella; Elena Tuccori; Krishna C Persaud
Journal:  Appl Microbiol Biotechnol       Date:  2013-11-22       Impact factor: 4.813

5.  A surface acoustic wave bio-electronic nose for detection of volatile odorant molecules.

Authors:  F Di Pietrantonio; M Benetti; D Cannatà; E Verona; A Palla-Papavlu; J M Fernández-Pradas; P Serra; M Staiano; A Varriale; S D'Auria
Journal:  Biosens Bioelectron       Date:  2014-09-18       Impact factor: 10.618

6.  Odorant-binding protein. Characterization of ligand binding.

Authors:  J Pevsner; V Hou; A M Snowman; S H Snyder
Journal:  J Biol Chem       Date:  1990-04-15       Impact factor: 5.157

7.  Release of Fragrances from Cotton Functionalized with Carbohydrate-Binding Module Proteins.

Authors:  Filipa Gonçalves; Artur Ribeiro; Carla Silva; Artur Cavaco-Paulo
Journal:  ACS Appl Mater Interfaces       Date:  2019-07-22       Impact factor: 9.229

8.  Evidence of an odorant-binding protein in the human olfactory mucus: location, structural characterization, and odorant-binding properties.

Authors:  Loïc Briand; Corinne Eloit; Claude Nespoulous; Valérie Bézirard; Jean-Claude Huet; Céline Henry; Florence Blon; Didier Trotier; Jean-Claude Pernollet
Journal:  Biochemistry       Date:  2002-06-11       Impact factor: 3.162

Review 9.  Odorant-Binding Proteins as Sensing Elements for Odour Monitoring.

Authors:  Paolo Pelosi; Jiao Zhu; Wolfgang Knoll
Journal:  Sensors (Basel)       Date:  2018-09-27       Impact factor: 3.576

10.  The human olfactory transcriptome.

Authors:  Tsviya Olender; Ifat Keydar; Jayant M Pinto; Pavlo Tatarskyy; Anna Alkelai; Ming-Shan Chien; Simon Fishilevich; Diego Restrepo; Hiroaki Matsunami; Yoav Gilad; Doron Lancet
Journal:  BMC Genomics       Date:  2016-08-11       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.