Literature DB >> 33495209

Dissecting dynamics and differences of selective pressures in the evolution of human pigmentation.

Xin Huang1, Sijia Wang2,3, Li Jin1,3, Yungang He4.   

Abstract

Human pigmentation is a highly diverse and complex trait among populations and has drawn particular attention from both academic and non-academic investigators for thousands of years. Previous studies detected selection signals in several human pigmentation genes, but few studies have integrated contribution from multiple genes to the evolution of human pigmentation. Moreover, none has quantified selective pressures on human pigmentation over epochs and between populations. Here, we dissect dynamics and differences of selective pressures during different periods and between distinct populations with new approaches. We use genotype data of 19 genes associated with human pigmentation from 17 publicly available datasets and obtain data for 2346 individuals of six representative population groups from across the world. Our results quantify the strength of natural selection on light pigmentation not only in modern Europeans (0.0259/generation) but also in proto-Eurasians (0.00650/generation). Our results also suggest that several derived alleles associated with human dark pigmentation may be under positive directional selection in some African populations. Our study provides the first attempt to quantitatively investigate the dynamics of selective pressures during different time periods in the evolution of human pigmentation.This article has an associated First Person interview with the first author of the article.
© 2021. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Complex traits; Human evolution; Human pigmentation; Natural selection; Population genetics

Mesh:

Year:  2021        PMID: 33495209      PMCID: PMC7888712          DOI: 10.1242/bio.056523

Source DB:  PubMed          Journal:  Biol Open        ISSN: 2046-6390            Impact factor:   2.422


  92 in total

1.  Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs.

Authors:  Brian P McEvoy; Joseph E Powell; Michael E Goddard; Peter M Visscher
Journal:  Genome Res       Date:  2011-04-25       Impact factor: 9.043

2.  The genome-wide structure of the Jewish people.

Authors:  Doron M Behar; Bayazit Yunusbayev; Mait Metspalu; Ene Metspalu; Saharon Rosset; Jüri Parik; Siiri Rootsi; Gyaneshwer Chaubey; Ildus Kutuev; Guennady Yudkovsky; Elza K Khusnutdinova; Oleg Balanovsky; Ornella Semino; Luisa Pereira; David Comas; David Gurwitz; Batsheva Bonne-Tamir; Tudor Parfitt; Michael F Hammer; Karl Skorecki; Richard Villems
Journal:  Nature       Date:  2010-06-09       Impact factor: 49.962

3.  Prediction of eye and skin color in diverse populations using seven SNPs.

Authors:  Olga Spichenok; Zoran M Budimlija; Adele A Mitchell; Andreas Jenny; Lejla Kovacevic; Damir Marjanovic; Theresa Caragine; Mechthild Prinz; Elisa Wurmbach
Journal:  Forensic Sci Int Genet       Date:  2010-11-02       Impact factor: 4.882

4.  Model-based prediction of human hair color using DNA variants.

Authors:  Wojciech Branicki; Fan Liu; Kate van Duijn; Jolanta Draus-Barini; Ewelina Pośpiech; Susan Walsh; Tomasz Kupiec; Anna Wojas-Pelc; Manfred Kayser
Journal:  Hum Genet       Date:  2011-01-04       Impact factor: 4.132

5.  HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter.

Authors:  Mijke Visser; Manfred Kayser; Robert-Jan Palstra
Journal:  Genome Res       Date:  2012-01-10       Impact factor: 9.043

6.  SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans.

Authors:  Rebecca L Lamason; Manzoor-Ali P K Mohideen; Jason R Mest; Andrew C Wong; Heather L Norton; Michele C Aros; Michael J Jurynec; Xianyun Mao; Vanessa R Humphreville; Jasper E Humbert; Soniya Sinha; Jessica L Moore; Pudur Jagadeeswaran; Wei Zhao; Gang Ning; Izabela Makalowska; Paul M McKeigue; David O'donnell; Rick Kittles; Esteban J Parra; Nancy J Mangini; David J Grunwald; Mark D Shriver; Victor A Canfield; Keith C Cheng
Journal:  Science       Date:  2005-12-16       Impact factor: 47.728

7.  Signatures of positive selection in genes associated with human skin pigmentation as revealed from analyses of single nucleotide polymorphisms.

Authors:  O Lao; J M de Gruijter; K van Duijn; A Navarro; M Kayser
Journal:  Ann Hum Genet       Date:  2007-01-18       Impact factor: 1.670

8.  Interactions between HERC2, OCA2 and MC1R may influence human pigmentation phenotype.

Authors:  Wojciech Branicki; Urszula Brudnik; Anna Wojas-Pelc
Journal:  Ann Hum Genet       Date:  2009-02-04       Impact factor: 1.670

9.  Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia.

Authors:  Sardana A Fedorova; Maere Reidla; Ene Metspalu; Mait Metspalu; Siiri Rootsi; Kristiina Tambets; Natalya Trofimova; Sergey I Zhadanov; Baharak Hooshiar Kashani; Anna Olivieri; Mikhail I Voevoda; Ludmila P Osipova; Fedor A Platonov; Mikhail I Tomsky; Elza K Khusnutdinova; Antonio Torroni; Richard Villems
Journal:  BMC Evol Biol       Date:  2013-06-19       Impact factor: 3.260

10.  Genomic analysis of natural selection and phenotypic variation in high-altitude mongolians.

Authors:  Jinchuan Xing; Tana Wuren; Tatum S Simonson; W Scott Watkins; David J Witherspoon; Wilfred Wu; Ga Qin; Chad D Huff; Lynn B Jorde; Ri-Li Ge
Journal:  PLoS Genet       Date:  2013-07-18       Impact factor: 5.917

View more
  2 in total

1.  Phenotypic and Clinical Traits That Correlate with Cognitive Impairment in Caucasian Females.

Authors:  Colleen Reisz; Karen Figenshau; An-Lin Cheng; Abdelmoneim Elfagir
Journal:  Womens Health Rep (New Rochelle)       Date:  2021-11-23

2.  Inferring Genome-Wide Correlations of Mutation Fitness Effects between Populations.

Authors:  Xin Huang; Alyssa Lyn Fortier; Alec J Coffman; Travis J Struck; Megan N Irby; Jennifer E James; José E León-Burguete; Aaron P Ragsdale; Ryan N Gutenkunst
Journal:  Mol Biol Evol       Date:  2021-09-27       Impact factor: 16.240

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.