Literature DB >> 21050833

Prediction of eye and skin color in diverse populations using seven SNPs.

Olga Spichenok1, Zoran M Budimlija, Adele A Mitchell, Andreas Jenny, Lejla Kovacevic, Damir Marjanovic, Theresa Caragine, Mechthild Prinz, Elisa Wurmbach.   

Abstract

An essential component in identifying human remains is the documentation of the decedent's visible characteristics, such as eye, hair and skin color. However, if a decedent is decomposed or only skeletal remains are found, this critical, visibly identifying information is lost. It would be beneficial to use genetic information to reveal these visible characteristics. In this study, seven single nucleotide polymorphisms (SNPs), located in and nearby genes known for their important role in pigmentation, were validated on 554 samples, donated from non-related individuals of various populations. Six SNPs were used in predicting the eye color of an individual, and all seven were used to describe the skin coloration. The outcome revealed that these markers can be applied to all populations with very low error rates. However, the call-rate to determine the skin coloration varied between populations, demonstrating its complexity. Overall, these results prove the importance of these seven SNPs for potential forensic tests.
Copyright © 2010 Elsevier Ireland Ltd. All rights reserved.

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Year:  2010        PMID: 21050833     DOI: 10.1016/j.fsigen.2010.10.005

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  33 in total

1.  Tooth, skin, hair and eye colour interrelationships in Greek young adults.

Authors:  Panagiotis E Lagouvardos; Ioana Tsamali; Christine Papadopoulou; Gregory Polyzois
Journal:  Odontology       Date:  2012-02-19       Impact factor: 2.634

2.  Assessment of IrisPlex-based multiplex for eye and skin color prediction with application to a Portuguese population.

Authors:  Paulo Dario; Helena Mouriño; Ana Rita Oliveira; Isabel Lucas; Teresa Ribeiro; Maria João Porto; Jorge Costa Santos; Deodália Dias; Francisco Corte Real
Journal:  Int J Legal Med       Date:  2015-08-20       Impact factor: 2.686

3.  The more the merrier? How a few SNPs predict pigmentation phenotypes in the Northern German population.

Authors:  Amke Caliebe; Melanie Harder; Rebecca Schuett; Michael Krawczak; Almut Nebel; Nicole von Wurmb-Schwark
Journal:  Eur J Hum Genet       Date:  2015-08-19       Impact factor: 4.246

4.  A panel of 130 autosomal single-nucleotide polymorphisms for ancestry assignment in five Asian populations and in Caucasians.

Authors:  Hsiao-Lin Hwa; Chih-Peng Lin; Tsun-Ying Huang; Po-Hsiu Kuo; Wei-Hsin Hsieh; Chun-Yen Lin; Hsiang-I Yin; Li-Hui Tseng; James Chun-I Lee
Journal:  Forensic Sci Med Pathol       Date:  2017-04-24       Impact factor: 2.007

5.  A single nucleotide polymorphism panel for individual identification and ancestry assignment in Caucasians and four East and Southeast Asian populations using a machine learning classifier.

Authors:  Hsiao-Lin Hwa; Ming-Yih Wu; Chih-Peng Lin; Wei Hsin Hsieh; Hsiang-I Yin; Tsui-Ting Lee; James Chun-I Lee
Journal:  Forensic Sci Med Pathol       Date:  2019-01-16       Impact factor: 2.007

6.  Prediction of people's origin from degraded DNA--presentation of SNP assays and calculation of probability.

Authors:  Micaela Poetsch; Rowena Blöhm; Melanie Harder; Hiromasa Inoue; Nicole von Wurmb-Schwark; Sandra Freitag-Wolf
Journal:  Int J Legal Med       Date:  2012-08-24       Impact factor: 2.686

7.  Determination of population origin: a comparison of autosomal SNPs, Y-chromosomal and mtDNA haplogroups using a Malagasy population as example.

Authors:  Micaela Poetsch; Aline Wiegand; Melanie Harder; Rowena Blöhm; Noel Rakotomavo; Sandra Freitag-Wolf; Nicole von Wurmb-Schwark
Journal:  Eur J Hum Genet       Date:  2013-04-24       Impact factor: 4.246

8.  Identification of individuals by trait prediction using whole-genome sequencing data.

Authors:  Christoph Lippert; Riccardo Sabatini; M Cyrus Maher; Eun Yong Kang; Seunghak Lee; Okan Arikan; Alena Harley; Axel Bernal; Peter Garst; Victor Lavrenko; Ken Yocum; Theodore Wong; Mingfu Zhu; Wen-Yun Yang; Chris Chang; Tim Lu; Charlie W H Lee; Barry Hicks; Smriti Ramakrishnan; Haibao Tang; Chao Xie; Jason Piper; Suzanne Brewerton; Yaron Turpaz; Amalio Telenti; Rhonda K Roby; Franz J Och; J Craig Venter
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-05       Impact factor: 11.205

9.  HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter.

Authors:  Mijke Visser; Manfred Kayser; Robert-Jan Palstra
Journal:  Genome Res       Date:  2012-01-10       Impact factor: 9.043

10.  Variation in Hsp70-1A Expression Contributes to Skin Color Diversity.

Authors:  Daiki Murase; Akira Hachiya; Rachel Fullenkamp; Anita Beck; Shigeru Moriwaki; Tadashi Hase; Yoshinori Takema; Prashiela Manga
Journal:  J Invest Dermatol       Date:  2016-04-16       Impact factor: 8.551

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