Literature DB >> 33493965

Outer membrane protein evolution.

Rik Dhar1, Joanna Sg Slusky2.   

Abstract

Outer membrane proteins have remarkably homogeneous structure. They are all up down β-barrels. Up down barrels themselves are composed of repeated sets of β-hairpins. The consistency of the usage of the β-hairpin throughout the outer membrane milieu allows for interrogation of the evolution of these repetitive structures. Here we describe recent investigations of outer membrane protein evolution and how evolutionary precepts have been used for novel outer membrane protein design.
Copyright © 2021 Elsevier Ltd. All rights reserved.

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Year:  2021        PMID: 33493965      PMCID: PMC8222147          DOI: 10.1016/j.sbi.2021.01.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   7.786


  54 in total

1.  In vitro folding, purification and characterization of Escherichia coli outer membrane protease ompT.

Authors:  R A Kramer; D Zandwijken; M R Egmond; N Dekker
Journal:  Eur J Biochem       Date:  2000-02

2.  An essential role of Sam50 in the protein sorting and assembly machinery of the mitochondrial outer membrane.

Authors:  Vera Kozjak; Nils Wiedemann; Dusanka Milenkovic; Christiane Lohaus; Helmut E Meyer; Bernard Guiard; Chris Meisinger; Nikolaus Pfanner
Journal:  J Biol Chem       Date:  2003-10-21       Impact factor: 5.157

Review 3.  More than the sum of their parts: on the evolution of proteins from peptides.

Authors:  Johannes Söding; Andrei N Lupas
Journal:  Bioessays       Date:  2003-09       Impact factor: 4.345

4.  Tight Turns of Outer Membrane Proteins: An Analysis of Sequence, Structure, and Hydrogen Bonding.

Authors:  Meghan Whitney Franklin; Joanna S G Slusky
Journal:  J Mol Biol       Date:  2018-06-23       Impact factor: 5.469

5.  The evolution of functionally novel proteins after gene duplication.

Authors:  A L Hughes
Journal:  Proc Biol Sci       Date:  1994-05-23       Impact factor: 5.349

Review 6.  Gene duplication as a major force in evolution.

Authors:  Santoshkumar Magadum; Urbi Banerjee; Priyadharshini Murugan; Doddabhimappa Gangapur; Rajasekar Ravikesavan
Journal:  J Genet       Date:  2013-04       Impact factor: 1.166

7.  Cryo-EM structure of the mitochondrial protein-import channel TOM complex at near-atomic resolution.

Authors:  Kyle Tucker; Eunyong Park
Journal:  Nat Struct Mol Biol       Date:  2019-11-18       Impact factor: 15.369

8.  A mortise-tenon joint in the transmembrane domain modulates autotransporter assembly into bacterial outer membranes.

Authors:  Denisse L Leyton; Matthew D Johnson; Rajiv Thapa; Gerard H M Huysmans; Rhys A Dunstan; Nermin Celik; Hsin-Hui Shen; Dorothy Loo; Matthew J Belousoff; Anthony W Purcell; Ian R Henderson; Travis Beddoe; Jamie Rossjohn; Lisandra L Martin; Richard A Strugnell; Trevor Lithgow
Journal:  Nat Commun       Date:  2014-06-26       Impact factor: 14.919

9.  Pattern of amino acid substitutions in transmembrane domains of β-barrel membrane proteins for detecting remote homologs in bacteria and mitochondria.

Authors:  David Jimenez-Morales; Jie Liang
Journal:  PLoS One       Date:  2011-11-01       Impact factor: 3.240

10.  An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins.

Authors:  Marcin Michalik; Marcella Orwick-Rydmark; Michael Habeck; Vikram Alva; Thomas Arnold; Dirk Linke
Journal:  PLoS One       Date:  2017-08-03       Impact factor: 3.240

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  2 in total

1.  Membrane Barrels Are Taller, Fatter, Inside-Out Soluble Barrels.

Authors:  Rik Dhar; Ryan Feehan; Joanna S G Slusky
Journal:  J Phys Chem B       Date:  2021-04-02       Impact factor: 2.991

2.  Colicin-Mediated Transport of DNA through the Iron Transporter FepA.

Authors:  Ruth Cohen-Khait; Ameya Harmalkar; Phuong Pham; Melissa N Webby; Nicholas G Housden; Emma Elliston; Jonathan T S Hopper; Shabaz Mohammed; Carol V Robinson; Jeffrey J Gray; Colin Kleanthous
Journal:  mBio       Date:  2021-09-21       Impact factor: 7.867

  2 in total

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