Literature DB >> 33490596

The first complete mitochondrial genome from the family Solasteridae, Crossaster papposus (Echinodermata, Asteroidea).

Sang-Eun Nam1, Sung Ah Kim1, Tae-Yoon S Park2,3, Jae-Sung Rhee1,4.   

Abstract

The common sunstar, Crossaster papposus, belongs to the family Solasteridae whose ordinal classification has been unstable. Here, for the first time, we assembled and annotated the complete mitochondrial genome of the common sunstar, C. papposus Linnaeus, 1767. The circular genome of C. papposus is 16,335 bp in length and contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, a control region, and large and small ribosomal subunits. The overall genomic structure and gene arrangement were identical to the reported mitochondrial genomes of sea star species, and a phylogenetic analysis of 13 PCGs recovers a closest relationship with the derived cluster of the paraphyletic order Valvatida.
© 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Mitochondrion; Solasteridae; Valvatida; phylogeny; sunstar

Year:  2021        PMID: 33490596      PMCID: PMC7801099          DOI: 10.1080/23802359.2020.1846001

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  7 in total

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Journal:  Syst Biol       Date:  2003-10       Impact factor: 15.683

2.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  The phylogeny of extant starfish (Asteroidea: Echinodermata) including Xyloplax, based on comparative transcriptomics.

Authors:  Gregorio V Linchangco; David W Foltz; Rob Reid; John Williams; Conor Nodzak; Alexander M Kerr; Allison K Miller; Rebecca Hunter; Nerida G Wilson; William J Nielsen; Christopher L Mah; Greg W Rouse; Gregory A Wray; Daniel A Janies
Journal:  Mol Phylogenet Evol       Date:  2017-07-27       Impact factor: 4.286

5.  jModelTest 2: more models, new heuristics and parallel computing.

Authors:  Diego Darriba; Guillermo L Taboada; Ramón Doallo; David Posada
Journal:  Nat Methods       Date:  2012-07-30       Impact factor: 28.547

6.  MITOS: improved de novo metazoan mitochondrial genome annotation.

Authors:  Matthias Bernt; Alexander Donath; Frank Jühling; Fabian Externbrink; Catherine Florentz; Guido Fritzsch; Joern Pütz; Martin Middendorf; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-09-07       Impact factor: 4.286

7.  On the genus Crossaster (Echinodermata: Asteroidea) and its distribution.

Authors:  Halldis Ringvold; Truls Moum
Journal:  PLoS One       Date:  2020-01-07       Impact factor: 3.240

  7 in total

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