Literature DB >> 33490568

The complete mitogenome of Metopograpsus quadridentatus and phylogenetic analysis.

Zhengfei Wang1, Chenyao Ji1, Ziqian Wang1, Dan Tang1, Qiong Wu1, Huayun Guo1, Yitao Tao1.   

Abstract

The complete mitochondrial genome of Metopograpsus quadridentatus was determined to be 15,520 bp in length. It consists of 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs and a control region. There are 13 overlapping regions in the genome with 1 to 25 bp length. The largest overlapping region is located between nad1 and trnL1. The AT-skew and GC-skew for the whole mitogenome are both negative, indicating a higher occurrence of Ts than As and Cs than Gs. The molecular data here we presented could play a useful role to study the evolutionary relationships and population genetics of Grapsidae crabs.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Brachyura; Grapsidae; Metopograpsus quadridentatus; Mitogenome; phylogentic

Year:  2018        PMID: 33490568      PMCID: PMC7800309          DOI: 10.1080/23802359.2018.1524272

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

1.  MRBAYES: Bayesian inference of phylogenetic trees.

Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

2.  The complete mitochondrial genome of Parasesarma pictum (Brachyura: Grapsoidea: Sesarmidae) and comparison with other Brachyuran crabs.

Authors:  Zhengfei Wang; Xuejia Shi; Yitao Tao; Qiong Wu; Yuze Bai; Huayun Guo; Dan Tang
Journal:  Genomics       Date:  2018-05-09       Impact factor: 5.736

3.  Mitogenomic analysis of decapod crustacean phylogeny corroborates traditional views on their relationships.

Authors:  Hong Shen; Anke Braband; Gerhard Scholtz
Journal:  Mol Phylogenet Evol       Date:  2012-11-29       Impact factor: 4.286

4.  Complete mitochondrial genome of Parasesarma affine (Brachyura: Sesarmidae): Gene rearrangements in Sesarmidae and phylogenetic analysis of the Brachyura.

Authors:  Zhengfei Wang; Ziqian Wang; Xuejia Shi; Qiong Wu; Yitao Tao; Huayun Guo; Chenyao Ji; Yuze Bai
Journal:  Int J Biol Macromol       Date:  2018-06-13       Impact factor: 6.953

5.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

6.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

  6 in total

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