Literature DB >> 29752988

The complete mitochondrial genome of Parasesarma pictum (Brachyura: Grapsoidea: Sesarmidae) and comparison with other Brachyuran crabs.

Zhengfei Wang1, Xuejia Shi2, Yitao Tao2, Qiong Wu2, Yuze Bai2, Huayun Guo2, Dan Tang2.   

Abstract

Mitochondrial DNA (mtDNA) is an extrachromosomal genome which can provide important information for evolution and phylogenetic analysis. In this study, we assembled a complete mitogenome of a crab Parasesarma pictum (Brachyura: Grapsoidea: Sesarmidae) from next generation sequencing reads at the first time. P. pictum is a mudflat crab, belonging to the Sesarmidae family (subfamily Sesarminae), which is perched on East Asia. The 15,716 bp mitogenome covers 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs), and one control region (CR). The control region spanns 420 bp. The genome composition was highly A+T biased 75.60% and showed negative AT-skew (-0.03) and negative GC-skew (-0.47). Compared with the ancestor of Brachyura, the gene order of Sesarmidae has several differences and the gene order of P. pictum is typical for mitogenomes of Sesarmidae. Phylogenetic tree based on nucleotide sequences of mitochondrial 13 PCGs using BI and ML determined that P. pictum has a sister group relationship with Parasesarma tripectinis and belongs to Sesarmidae.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Gene order; Mitogenome; Parasesarma pictum; Phylogentic; Sesarmidae

Year:  2018        PMID: 29752988     DOI: 10.1016/j.ygeno.2018.05.002

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  7 in total

1.  The Entire Mitochondrial Genome of Macrophthalmus abbreviatus Reveals Insights into the Phylogeny and Gene Rearrangements of Brachyura.

Authors:  Xinyi Xu; Qi Wang; Qiong Wu; Jiayan Xu; Jie Wang; Zhengfei Wang
Journal:  Biochem Genet       Date:  2021-01-07       Impact factor: 1.890

2.  Analysis of Complete Mitochondrial Genome of Bohadschia argus (Jaeger, 1833) (Aspidochirotida, Holothuriidae).

Authors:  Bo Ma; Zhuobo Li; Ying Lv; Zixuan E; Jianxiang Fang; Chunhua Ren; Peng Luo; Chaoqun Hu
Journal:  Animals (Basel)       Date:  2022-06-02       Impact factor: 3.231

3.  Characterization of the Complete Mitochondrial Genome of the Bromeliad Crab Metopaulias depressus (Rathbun, 1896) (Crustacea: Decapoda: Brachyura: Sesarmidae).

Authors:  Milena A Rodriguez-Pilco; Peter Leśny; Lars Podsiadłowski; Christoph D Schubart; Juan Antonio Baeza
Journal:  Genes (Basel)       Date:  2022-02-04       Impact factor: 4.096

4.  Comparison of the complete mitochondrial genome of Phyllophorus liuwutiensis (Echinodermata: Holothuroidea: Phyllophoridae) to that of other sea cucumbers.

Authors:  Fuyuan Yang; Chen Zhou; Ngoc Tuan Tran; Zaiqiao Sun; Jianshao Wu; Hui Ge; Zhen Lu; Chenhui Zhong; Zhihuang Zhu; Qiuhua Yang; Qi Lin
Journal:  FEBS Open Bio       Date:  2020-07-17       Impact factor: 2.693

5.  Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus.

Authors:  Hsin-Han Lee; Huei-Mien Ke; Chan-Yi Ivy Lin; Tracy J Lee; Chia-Lin Chung; Isheng J Tsai
Journal:  Genome Biol Evol       Date:  2019-10-01       Impact factor: 3.416

6.  The complete mitogenome of Metopograpsus quadridentatus and phylogenetic analysis.

Authors:  Zhengfei Wang; Chenyao Ji; Ziqian Wang; Dan Tang; Qiong Wu; Huayun Guo; Yitao Tao
Journal:  Mitochondrial DNA B Resour       Date:  2018-10-27       Impact factor: 0.658

7.  The First Complete Mitochondrial Genome of Eucrate crenata (Decapoda: Brachyura: Goneplacidae) and Phylogenetic Relationships within Infraorder Brachyura.

Authors:  Xiaoke Pang; Chenglong Han; Biao Guo; Kefeng Liu; Xiaolong Lin; Xueqiang Lu
Journal:  Genes (Basel)       Date:  2022-06-23       Impact factor: 4.141

  7 in total

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