Literature DB >> 33490547

The complete mitochondrial genome of a freshwater mussel Nodularia douglasiae (Bivalvia: Unionidae).

Seung Hyun Cha1, Jin Hee Lee1,2, Eun Hwa Choi1, Kuem Hee Jang1, Young Jin Lim1, Sang Gi Kim3, Shi Hyun Ryu3, Young Sup Lee2, Ui Wook Hwang1.   

Abstract

The circular F-type mitochondrial genome (15,761 bp) was completely sequenced for a Korean freshwater mussel Nodularia douglasiae (synonym Unio douglasiae; Unionidae, Unionida, Bivalvia). It contains 13 PCGs, two rRNA genes, and 22 tRNA genes, as generally shown in metazoan mitochondrial genomes. Its gene order is identical to that of F-type mitochondrial genomes observed in other freshwater mussels. With nucleotide and amino acid sequences of the complete F-type mitochondrial genomes obtained from 38 unionid species reported so far, phylogenetic analyses were done and discussed. The present study may give valuable helps to explore genetic diversity and population structures of other freshwater mussels as well as N. douglasiae.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Bivalvia; Nodularia douglasiae; complete mitochondrial genome; molecular phylogeny

Year:  2018        PMID: 33490547      PMCID: PMC7800389          DOI: 10.1080/23802359.2018.1471365

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

1.  ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences.

Authors:  Dean Laslett; Björn Canbäck
Journal:  Bioinformatics       Date:  2007-11-22       Impact factor: 6.937

2.  Complete F-type mitochondrial genome of freshwater mussels Unio douglasiae.

Authors:  Guiling Wang; Ting Xue; Meiling Chen; Liping Guo; Jiale Li
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-01-28       Impact factor: 1.514

3.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

4.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

5.  tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.

Authors:  Todd M Lowe; Patricia P Chan
Journal:  Nucleic Acids Res       Date:  2016-05-12       Impact factor: 16.971

6.  Genetic structure and diversity of Nodularia douglasiae (Bivalvia: Unionida) from the middle and lower Yangtze River drainage.

Authors:  Xiongjun Liu; Yanling Cao; Taotao Xue; Ruiwen Wu; Yu Zhou; Chunhua Zhou; David T Zanatta; Shan Ouyang; Xiaoping Wu
Journal:  PLoS One       Date:  2017-12-20       Impact factor: 3.240

  6 in total
  1 in total

1.  Complete mitochondrial genome of a Korean endemic freshwater mussel Nodularia breviconcha (Bivalvia: Unionidae).

Authors:  Yu Rim Kim; Hee-Kyu Choi; Kyeong-Sik Cheon; Hyuk Je Lee
Journal:  Mitochondrial DNA B Resour       Date:  2021-01-11       Impact factor: 0.658

  1 in total

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