Literature DB >> 33490474

The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae).

Sangjin Jo1, Hoe-Won Kim1, Young-Kee Kim1, Jung-Yeon Sohn1, Se-Hwan Cheon1, Ki-Joong Kim1.   

Abstract

The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small single copy of 17,703 bp, separated by two inverted repeats of 27,009 bp. The G. mangostana plastome shows four minor structural modifications including infA gene loss, rpl32 gene loss, ycf3 gene intron loss and a 363 bp inversion between trnV-UAC and atpE gene. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes and four are rRNA genes. The average A-T content of the plastome is 63.9%. A total of 110 simple sequence loci are identified from the genome. Phylogenetic analysis reveals that G. mangostana is a sister group of Erythroxylum novogranatense (Erythroxylaceae) with 78% bootstrap support.
© 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Clusiaceae; Garcinia mangostana; Plastome; gene and intron losses; small inversition

Year:  2017        PMID: 33490474      PMCID: PMC7800348          DOI: 10.1080/23802359.2017.1390406

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  13 in total

1.  The first complete chloroplast genome sequence from Violaceae (Viola seoulensis).

Authors:  Kyeong-Sik Cheon; Jong-Cheol Yang; Kyung-Ah Kim; Su-Kil Jang; Ki-Oug Yoo
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-12-28       Impact factor: 1.514

2.  A rapid bootstrap algorithm for the RAxML Web servers.

Authors:  Alexandros Stamatakis; Paul Hoover; Jacques Rougemont
Journal:  Syst Biol       Date:  2008-10       Impact factor: 15.683

3.  Phylogeny of the clusioid clade (Malpighiales): evidence from the plastid and mitochondrial genomes.

Authors:  Brad R Ruhfel; Volker Bittrich; Claudia P Bove; Mats H G Gustafsson; C Thomas Philbrick; Rolf Rutishauser; Zhenxiang Xi; Charles C Davis
Journal:  Am J Bot       Date:  2011-01-26       Impact factor: 3.844

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales.

Authors:  Zhenxiang Xi; Brad R Ruhfel; Hanno Schaefer; André M Amorim; M Sugumaran; Kenneth J Wurdack; Peter K Endress; Merran L Matthews; Peter F Stevens; Sarah Mathews; Charles C Davis
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

6.  Unraveling the biogeographical history of Chrysobalanaceae from plastid genomes.

Authors:  Léa Bardon; Cynthia Sothers; Ghillean T Prance; Pierre-Jean G Malé; Zhenxiang Xi; Charles C Davis; Jerome Murienne; Roosevelt García-Villacorta; Eric Coissac; Sébastien Lavergne; Jérôme Chave
Journal:  Am J Bot       Date:  2016-06-21       Impact factor: 3.844

7.  Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants.

Authors:  Ki-Joong Kim; Hae-Lim Lee
Journal:  DNA Res       Date:  2004-08-31       Impact factor: 4.458

8.  Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, Populus balsamifera and P. trichocarpa (Salicaceae).

Authors:  Daisie I Huang; Charles A Hefer; Natalia Kolosova; Carl J Douglas; Quentin C B Cronk
Journal:  New Phytol       Date:  2014-07-31       Impact factor: 10.151

9.  The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

Authors:  K Shinozaki; M Ohme; M Tanaka; T Wakasugi; N Hayashida; T Matsubayashi; N Zaita; J Chunwongse; J Obokata; K Yamaguchi-Shinozaki; C Ohto; K Torazawa; B Y Meng; M Sugita; H Deno; T Kamogashira; K Yamada; J Kusuda; F Takaiwa; A Kato; N Tohdoh; H Shimada; M Sugiura
Journal:  EMBO J       Date:  1986-09       Impact factor: 11.598

10.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

View more
  1 in total

1.  The evolutionary fate of rpl32 and rps16 losses in the Euphorbia schimperi (Euphorbiaceae) plastome.

Authors:  Aldanah A Alqahtani; Robert K Jansen
Journal:  Sci Rep       Date:  2021-04-02       Impact factor: 4.379

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.