Literature DB >> 33490441

Complete mitochondrial genome sequence of the freshwater diatom Asterionella formosa.

Adrien Villain1, Mila Kojadinovic2, Carine Puppo2, Laura Prioretti2, Pierre Hubert3, Yizhi Zhang2, Gérald Grégori4, Alain Roulet5,6, Céline Roques5,6, Jean-Michel Claverie1,7, Brigitte Gontero2, Guillaume Blanc1.   

Abstract

We report the complete mitochondrial genome sequence of the freshwater diatom Asterionella formosa. The large 61.9 kb circular sequence encodes 34 proteins and 25 tRNAs that are universally conserved in other sequenced diatoms. We fully resolved a unique 24 kb region containing highly conserved repeated sequence units, possibly collocating with an origin of replication.
© 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Asterionella; Diatoms; mitogenome; pacbio

Year:  2017        PMID： 33490441      PMCID： PMC7800273          DOI： 10.1080/23802359.2017.1285210

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  14 in total

1.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

2.  Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes.

Authors:  Nikolai V Ravin; Yuri P Galachyants; Andrey V Mardanov; Alexey V Beletsky; Darya P Petrova; Tatyana A Sherbakova; Yuliya R Zakharova; Yelena V Likhoshway; Konstantin G Skryabin; Mikhail A Grachev
Journal:  Curr Genet       Date:  2010-03-23       Impact factor: 3.886

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 4.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

5.  Unipro UGENE: a unified bioinformatics toolkit.

Authors:  Konstantin Okonechnikov; Olga Golosova; Mikhail Fursov
Journal:  Bioinformatics       Date:  2012-02-24       Impact factor: 6.937

6.  ProtTest 3: fast selection of best-fit models of protein evolution.

Authors:  Diego Darriba; Guillermo L Taboada; Ramón Doallo; David Posada
Journal:  Bioinformatics       Date:  2011-02-17       Impact factor: 6.937

7.  Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana.

Authors:  Marie-Pierre Oudot-Le Secq; Beverley R Green
Journal:  Gene       Date:  2011-02-12       Impact factor: 3.688

8.  Complete mitochondrial genome of Skeletonema marinoi (Mediophyceae, Bacillariophyta), a clonal chain forming diatom in the west coast of Korea.

Authors:  Sung Min An; Soo Yeon Kim; Jae Hoon Noh; Eun Chan Yang
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-12-07       Impact factor: 1.514

9.  The Rhodomonas salina mitochondrial genome: bacteria-like operons, compact gene arrangement and complex repeat region.

Authors:  Amy M Hauth; Uwe G Maier; B Franz Lang; Gertraud Burger
Journal:  Nucleic Acids Res       Date:  2005-08-05       Impact factor: 16.971

10.  TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses.

Authors:  Ben C Stöver; Kai F Müller
Journal:  BMC Bioinformatics       Date:  2010-01-05       Impact factor: 3.169
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  3 in total

1.  Haslea silbo, A Novel Cosmopolitan Species of Blue Diatoms.

Authors:  Romain Gastineau; Gert Hansen; Michel Poulin; Claude Lemieux; Monique Turmel; Jean-François Bardeau; Vincent Leignel; Yann Hardivillier; Michèle Morançais; Joël Fleurence; Pierre Gaudin; Vona Méléder; Eileen J Cox; Nikolaï A Davidovich; Olga I Davidovich; Andrzej Witkowski; Irena Kaczmarska; James M Ehrman; Emilio Soler Onís; Antera Martel Quintana; Maja Mucko; Solenn Mordret; Diana Sarno; Boris Jacquette; Charlotte Falaise; Julie Séveno; Niels L Lindquist; Philip S Kemp; Elif Eker-Develi; Merve Konucu; Jean-Luc Mouget
Journal:  Biology (Basel)       Date:  2021-04-14

2.  Definition of a High-Resolution Molecular Marker for Tracking the Genetic Diversity of the Harmful Algal Species Eucampia zodiacus Through Comparative Analysis of Mitochondrial Genomes.

Authors:  Mengjia Zhang; Zongmei Cui; Feng Liu; Nansheng Chen
Journal:  Front Microbiol       Date:  2021-03-24       Impact factor: 5.640

3.  Diatom Biodiversity and Speciation Revealed by Comparative Analysis of Mitochondrial Genomes.

Authors:  Yichao Wang; Shuya Liu; Jing Wang; Yanxin Yao; Yang Chen; Qing Xu; Zengxia Zhao; Nansheng Chen
Journal:  Front Plant Sci       Date:  2022-03-24       Impact factor: 5.753
  3 in total

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