Literature DB >> 33490416

The complete plastome sequence of Diospyros blancoi A. DC. (Ebenaceae).

Sangjin Jo1, Hoe-Won Kim1, Young-Kee Kim1, Se-Hwan Cheon1, Ki-Joong Kim1.   

Abstract

The plastome sequences of Diospyros blancoi A. DC. (Ebenaceae) were completed in this study (NCBI acc. no. KX426216). The gene order and structure of the D. blancoi plastome are collinear with the typical plastome of land plants. The complete plastome size is 157,745 bp in length and consists of a large single-copy region of 87,246 bp and a small single-copy region of 18,323 bp, which are separated by a pair of 26,088 bp-long inverted repeat regions. The overall A-T content of the plastome sequence is 62.6%. The plastome contains 113 genes, of which 79 are protein-coding genes, 30 are tRNA genes, and 4 are rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 45 simple sequence loci were identified from the genome. Phylogenetic analysis revealed that D. blancoi is a sister group of Primulaceae with 100% bootstrap support.
© 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Diospyros blancoi; Ebenaceae; Plastome; tropical fruit

Year:  2016        PMID: 33490416      PMCID: PMC7800293          DOI: 10.1080/23802359.2016.1219647

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  8 in total

1.  Automatic annotation of organellar genomes with DOGMA.

Authors:  Stacia K Wyman; Robert K Jansen; Jeffrey L Boore
Journal:  Bioinformatics       Date:  2004-06-04       Impact factor: 6.937

2.  A rapid bootstrap algorithm for the RAxML Web servers.

Authors:  Alexandros Stamatakis; Paul Hoover; Jacques Rougemont
Journal:  Syst Biol       Date:  2008-10       Impact factor: 15.683

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Complete chloroplast genome sequences from Korean ginseng (Panax schinseng Nees) and comparative analysis of sequence evolution among 17 vascular plants.

Authors:  Ki-Joong Kim; Hae-Lim Lee
Journal:  DNA Res       Date:  2004-08-31       Impact factor: 4.458

5.  The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

Authors:  K Shinozaki; M Ohme; M Tanaka; T Wakasugi; N Hayashida; T Matsubayashi; N Zaita; J Chunwongse; J Obokata; K Yamaguchi-Shinozaki; C Ohto; K Torazawa; B Y Meng; M Sugita; H Deno; T Kamogashira; K Yamada; J Kusuda; F Takaiwa; A Kato; N Tohdoh; H Shimada; M Sugiura
Journal:  EMBO J       Date:  1986-09       Impact factor: 11.598

6.  Complete chloroplast genome sequences of important oilseed crop Sesamum indicum L.

Authors:  Dong-Keun Yi; Ki-Joong Kim
Journal:  PLoS One       Date:  2012-05-14       Impact factor: 3.240

7.  Five Complete Chloroplast Genome Sequences from Diospyros: Genome Organization and Comparative Analysis.

Authors:  Jianmin Fu; Huimin Liu; Jingjing Hu; Yuqin Liang; Jinjun Liang; Tana Wuyun; Xiaofeng Tan
Journal:  PLoS One       Date:  2016-07-21       Impact factor: 3.240

8.  Sequencing of whole plastid genomes and nuclear ribosomal DNA of Diospyros species (Ebenaceae) endemic to New Caledonia: many species, little divergence.

Authors:  Barbara Turner; Ovidiu Paun; Jérôme Munzinger; Mark W Chase; Rosabelle Samuel
Journal:  Ann Bot       Date:  2016-04-20       Impact factor: 4.357

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.