Literature DB >> 33490412

The complete mitochondrial genome sequence of the giant mudskipper, Periophthalmodon schlosseri (Perciformes: gobiidae).

Yunhai Yi1, Kai Zhang1, Jieming Chen2, Zhiqiang Ruan2, Xinxin You2, Qiong Shi1,2,3.   

Abstract

The complete mitochondrial genome sequence of the giant mudskipper, Periophthalmodon schlosseri, was first reported in this study. The circle genome is 16 470 bp in length, with the base composition of 28.4% T, 15.4% G, 29.2% A and 27.0% C. The mitogenome includes 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and one D-loop region. Only the NADH dehydrogenase subunit 6 (NAD6) and eight tRNA genes are encoded on the light strand. The mitochondrial gene arrangement of P. schlosseri is similar to those of most other gobies. The phylogenetic analysis using the neighbor-joining method showed that the kinship between Periophthalmodon and Periophthalmus is closer than those between Periophthalmodon and other selected genera. Our complete mitogenome data are going to provide the basis for taxonomic and phylogenetic research of amphibious mudskippers.
© 2016 BGI. Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Mitochondrial genome; Periophthalmodon schlosseri; phylogenetic tree

Year:  2016        PMID: 33490412      PMCID: PMC7800980          DOI: 10.1080/23802359.2016.1202742

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  7 in total

1.  Automatic annotation of organellar genomes with DOGMA.

Authors:  Stacia K Wyman; Robert K Jansen; Jeffrey L Boore
Journal:  Bioinformatics       Date:  2004-06-04       Impact factor: 6.937

2.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

3.  Complete mitochondrial genome and phylogenic analysis of the mudskipper Scartelaos gigas (Perciformes, Gobiidae).

Authors:  Zhe Li; Yuting Zhang; Shixi Chen; Wei Chen; Wanshu Hong
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-10-05       Impact factor: 1.514

4.  Complete mitochondrial genome of the mudskipper Boleophthalmus pectinirostris (Perciformes, Gobiidae): repetitive sequences in the control region.

Authors:  Zhi Zhi Liu; Cong Tao Wang; Ling Bo Ma; An Yuan He; Jin Quan Yang; Wen Qiao Tang
Journal:  Mitochondrial DNA       Date:  2012-02

5.  The complete mitogenome of the minute mudskipper, Periophthalmus minutus Eggert, 1935 (Perciformes: Gobiidae: Oxudercinae).

Authors:  Han Ming Gan; Mun Hua Tan; Yin Peng Lee; Michael P Hammer; Christopher M Austin
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-01-20       Impact factor: 1.514

6.  Complete mitochondrial genome and phylogenetic analysis of the barred mudskipper Periophthalmus argentilineatus (Perciformes, Gobiidae).

Authors:  Hengtong Qiu; Yuting Zhang; Zhe Li; Shixi Chen; Wanshu Hong; Qiong Wang
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-12-28       Impact factor: 1.514

7.  Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes.

Authors:  Xinxin You; Chao Bian; Qijie Zan; Xun Xu; Xin Liu; Jieming Chen; Jintu Wang; Ying Qiu; Wujiao Li; Xinhui Zhang; Ying Sun; Shixi Chen; Wanshu Hong; Yuxiang Li; Shifeng Cheng; Guangyi Fan; Chengcheng Shi; Jie Liang; Y Tom Tang; Chengye Yang; Zhiqiang Ruan; Jie Bai; Chao Peng; Qian Mu; Jun Lu; Mingjun Fan; Shuang Yang; Zhiyong Huang; Xuanting Jiang; Xiaodong Fang; Guojie Zhang; Yong Zhang; Gianluca Polgar; Hui Yu; Jia Li; Zhongjian Liu; Guoqiang Zhang; Vydianathan Ravi; Steven L Coon; Jian Wang; Huanming Yang; Byrappa Venkatesh; Jun Wang; Qiong Shi
Journal:  Nat Commun       Date:  2014-12-02       Impact factor: 14.919

  7 in total
  1 in total

1.  Complete mitochondrial genome of the Acentrogobius pflaumii (Gobiiformes, Gobiidae) with phylogenetic consideration.

Authors:  Hao Wu; Meiya Yu; Lei Zhou
Journal:  Mitochondrial DNA B Resour       Date:  2020-01-29       Impact factor: 0.658

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.