Literature DB >> 33490409

The complete mitochondrial genome of Baikalospongia intermedia (Lubomirskiidae): description and phylogenetic analysis.

Olga Maikova1, Dmitry Sherbakov1, Sergei Belikov1.   

Abstract

The complete mitochondrial genome of the Lake Baikal sponge Baikalospongia intermedia was sequenced. The circular mitochondrial genome is 28,327 bp in length and includes 14 protein-coding genes, 2 ribosomal RNA genes and 25 transfer RNA genes. Bayesian comparative analysis of molecular evolution rates was found no acceleration of the mtDNA evolution of B. intermedia. This species clustered with other species of the genus Baikalospongia on the Bayesian tree.
© 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Lake Baikal; mitochondrial genome; sponges

Year:  2016        PMID： 33490409      PMCID： PMC7801006          DOI： 10.1080/23802359.2016.1172273

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  6 in total

1.  Small inverted repeats drive mitochondrial genome evolution in Lake Baikal sponges.

Authors:  Dennis V Lavrov; Olga O Maikova; Walker Pett; Sergey I Belikov
Journal:  Gene       Date:  2012-06-02       Impact factor: 3.688

2.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

3.  Recent developments in the MAFFT multiple sequence alignment program.

Authors:  Kazutaka Katoh; Hiroyuki Toh
Journal:  Brief Bioinform       Date:  2008-03-27       Impact factor: 11.622

4.  Rapid proliferation of repetitive palindromic elements in mtDNA of the endemic Baikalian sponge Lubomirskia baicalensis.

Authors:  Dennis V Lavrov
Journal:  Mol Biol Evol       Date:  2009-12-21       Impact factor: 16.240

5.  Ribosomal ITS sequences allow resolution of freshwater sponge phylogeny with alignments guided by secondary structure prediction.

Authors:  Valeria Itskovich; Andrey Gontcharov; Yoshiki Masuda; Tsutomu Nohno; Sergey Belikov; Sofia Efremova; Martin Meixner; Dorte Janussen
Journal:  J Mol Evol       Date:  2008-12       Impact factor: 2.395

6.  Non-optimal codon usage affects expression, structure and function of clock protein FRQ.

Authors:  Mian Zhou; Jinhu Guo; Joonseok Cha; Michael Chae; She Chen; Jose M Barral; Matthew S Sachs; Yi Liu
Journal:  Nature       Date:  2013-02-17       Impact factor: 49.962
  6 in total

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