Literature DB >> 33490387

The complete mitochondrial genome of Pareuchiloglanis gongshanensis (Siluriformes, Sisoridae, Pareuchiloglanis): genome characterization and phylogenetic analysis.

Bo Li1, Zhifu Tian2, Ya Qin1, Meng Hao1, Jiabo Zhang1.   

Abstract

Pareuchiloglanis gongshanensis, a small-sized benthic fish, distributed in southwest China. In the present study, the complete mitochondrial genome of P. gongshanensis was sequenced to be 16 588 bp in length, including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, a control region and the origin of the light strand replication. The overall nucleotide composition was 30.70% A, 24.11% T, 29.16% C and 16.02% G, with an A + T bias of 54.82%. The gene composition and the structural arrangement of the P. gongshanensis complete mitochondrial DNA were identical to most of the other vertebrates. This will provide a useful tool for understanding the genetic diversity, population structure and conservation status of P. gongshanensis in the future.
© 2016 The Author(s). Published by Taylor & Francis.

Entities:  

Keywords:  Control region; Pareuchiloglanis gongshanensis; mitochondrial genome; phylogenetic relationship

Year:  2016        PMID: 33490387      PMCID: PMC7800246          DOI: 10.1080/23802359.2015.1137822

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  7 in total

1.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

2.  MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences.

Authors:  Sudhir Kumar; Masatoshi Nei; Joel Dudley; Koichiro Tamura
Journal:  Brief Bioinform       Date:  2008-04-16       Impact factor: 11.622

3.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

4.  Mitochondrial genome of the Shorthead catfish (Pelteobagrus eupogon).

Authors:  Xiao-Yang Wang; Lei Cao; Hong-Wei Liang; Zhong Li; Gui-Wei Zou
Journal:  Mitochondrial DNA       Date:  2012-09-12

5.  Sequence and gene organization of mouse mitochondrial DNA.

Authors:  M J Bibb; R A Van Etten; C T Wright; M W Walberg; D A Clayton
Journal:  Cell       Date:  1981-10       Impact factor: 41.582

6.  The complete mitochondrial genome of Glyptothorax fukiensis fukiensis (Teleostei, Siluriformes: Sisoridae).

Authors:  Chuanjiang Zhou; Dengqiang Wang; Meiling Yu; Shunping He
Journal:  Mitochondrial DNA       Date:  2012-09-03

7.  MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline.

Authors:  Wataru Iwasaki; Tsukasa Fukunaga; Ryota Isagozawa; Koichiro Yamada; Yasunobu Maeda; Takashi P Satoh; Tetsuya Sado; Kohji Mabuchi; Hirohiko Takeshima; Masaki Miya; Mutsumi Nishida
Journal:  Mol Biol Evol       Date:  2013-08-16       Impact factor: 16.240

  7 in total
  1 in total

1.  The complete mitochondrial genome of Pareuchiloglanis feae (Siluriformes, Sisoridae, Pareuchiloglanis): genome characterization and phylogenetic analysis.

Authors:  Sheng Zeng; Xue Wang; Wei Liu; Yan Xiang; Lu Zhou
Journal:  Mitochondrial DNA B Resour       Date:  2022-07-06       Impact factor: 0.610

  1 in total

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