Literature DB >> 33486548

Optimal Evolution of the Standard Genetic Code.

Michael Yarus1.   

Abstract

The Standard Genetic Code (SGC) exists in every known organism on Earth. SGC evolution via early unique codon assignment, then later wobble, yields coding resembling the near-universal code. Below, later wobble is shown to also create an optimal route to accurate codon assignment. Time of optimal codon assignment matches the previously defined mean time for ordered coding, exhibiting ≥ 90% of SGC order. Accurate evolution is also accessible, sufficiently frequent to appear in populations of 103 to 104 codes. SGC-like coding capacity, code order, and accurate assignments therefore arise together, in one attainable evolutionary intermediate. Examples, which plausibly resemble coding at evolutionary domain separation, are characterized.

Entities:  

Keywords:  Coding; Codon; Evolve; Triplet; Wobble

Year:  2021        PMID: 33486548      PMCID: PMC7884564          DOI: 10.1007/s00239-020-09984-8

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  11 in total

1.  Testing a biosynthetic theory of the genetic code: fact or artifact?

Authors:  T A Ronneberg; L F Landweber; S J Freeland
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

2.  The genetic code is one in a million.

Authors:  S J Freeland; L D Hurst
Journal:  J Mol Evol       Date:  1998-09       Impact factor: 2.395

3.  An analysis of the metabolic theory of the origin of the genetic code.

Authors:  R Amirnovin
Journal:  J Mol Evol       Date:  1997-05       Impact factor: 2.395

4.  Genetic Code Error Minimization as a Non-Adaptive But Beneficial Trait.

Authors:  Steven E Massey
Journal:  J Mol Evol       Date:  2019-01-02       Impact factor: 2.395

5.  The molecular basis for the genetic code.

Authors:  C R Woese; D H Dugre; W C Saxinger; S A Dugre
Journal:  Proc Natl Acad Sci U S A       Date:  1966-04       Impact factor: 11.205

6.  On the physical basis of the amino acid polar requirement.

Authors:  Damien C Mathew; Zaida Luthey-Schulten
Journal:  J Mol Evol       Date:  2008-04-29       Impact factor: 2.395

Review 7.  The Genetic Code and RNA-Amino Acid Affinities.

Authors:  Michael Yarus
Journal:  Life (Basel)       Date:  2017-03-23

8.  Eighty routes to a ribonucleotide world; dispersion and stringency in the decisive selection.

Authors:  Michael Yarus
Journal:  RNA       Date:  2018-05-21       Impact factor: 4.942

9.  Evolution of the Standard Genetic Code.

Authors:  Michael Yarus
Journal:  J Mol Evol       Date:  2021-01-24       Impact factor: 2.395

Review 10.  An integrated, structure- and energy-based view of the genetic code.

Authors:  Henri Grosjean; Eric Westhof
Journal:  Nucleic Acids Res       Date:  2016-07-22       Impact factor: 16.971

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  2 in total

1.  Fitting the standard genetic code into its triplet table.

Authors:  Michael Yarus
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-07       Impact factor: 11.205

2.  A crescendo of competent coding (c3) contains the Standard Genetic Code.

Authors:  Michael Yarus
Journal:  RNA       Date:  2022-07-22       Impact factor: 5.636

  2 in total

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