Literature DB >> 33479306

Proposal and validation of a method to classify genetic subtypes of diffuse large B cell lymphoma.

Lucía Pedrosa1,2, Ismael Fernández-Miranda1,2, David Pérez-Callejo3,4, Cristina Quero5, Marta Rodríguez6,7, Paloma Martín-Acosta7,8, Sagrario Gómez1, Julia González-Rincón1,7, Adrián Santos8, Carlos Tarin9,10, Juan F García7,11, Francisco R García-Arroyo12, Antonio Rueda13, Francisca I Camacho14, Mónica García-Cosío15, Ana Heredero1, Marta Llanos16, Manuela Mollejo7,17, Miguel Piris-Villaespesa18, José Gómez-Codina19, Natalia Yanguas-Casás1, Antonio Sánchez3, Miguel A Piris6,7, Mariano Provencio3, Margarita Sánchez-Beato20,21.   

Abstract

Diffuse large B-cell lymphoma (DLBCL) is a heterogeneous disease whose prognosis is associated with clinical features, cell-of-origin and genetic aberrations. Recent integrative, multi-omic analyses had led to identifying overlapping genetic DLBCL subtypes. We used targeted massive sequencing to analyze 84 diagnostic samples from a multicenter cohort of patients with DLBCL treated with rituximab-containing therapies and a median follow-up of 6 years. The most frequently mutated genes were IGLL5 (43%), KMT2D (33.3%), CREBBP (28.6%), PIM1 (26.2%), and CARD11 (22.6%). Mutations in CD79B were associated with a higher risk of relapse after treatment, whereas patients with mutations in CD79B, ETS1, and CD58 had a significantly shorter survival. Based on the new genetic DLBCL classifications, we tested and validated a simplified method to classify samples in five genetic subtypes analyzing the mutational status of 26 genes and BCL2 and BCL6 translocations. We propose a two-step genetic DLBCL classifier (2-S), integrating the most significant features from previous algorithms, to classify the samples as N12-S, EZB2-S, MCD2-S, BN22-S, and ST22-S groups. We determined its sensitivity and specificity, compared with the other established algorithms, and evaluated its clinical impact. The results showed that ST22-S is the group with the best clinical outcome and N12-S, the more aggressive one. EZB2-S identified a subgroup with a worse prognosis among GCB-DLBLC cases.

Entities:  

Year:  2021        PMID: 33479306      PMCID: PMC7820010          DOI: 10.1038/s41598-020-80376-0

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  41 in total

1.  A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma.

Authors:  George Wright; Bruce Tan; Andreas Rosenwald; Elaine H Hurt; Adrian Wiestner; Louis M Staudt
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-04       Impact factor: 11.205

2.  The γ-secretase inhibitor PF-03084014 combined with fludarabine antagonizes migration, invasion and angiogenesis in NOTCH1-mutated CLL cells.

Authors:  M López-Guerra; S Xargay-Torrent; L Rosich; A Montraveta; J Roldán; A Matas-Céspedes; N Villamor; M Aymerich; C López-Otín; P Pérez-Galán; G Roué; E Campo; D Colomer
Journal:  Leukemia       Date:  2014-04-30       Impact factor: 11.528

3.  A Phase I, dose-finding study in patients with advanced solid malignancies of the oral γ-secretase inhibitor PF-03084014.

Authors:  Wells A Messersmith; Geoffrey I Shapiro; James M Cleary; Antonio Jimeno; Arvind Dasari; Bo Huang; M Naveed Shaik; Rossano Cesari; Xianxian Zheng; Jennifer M Reynolds; Patricia A English; Karen R McLachlan; Kenneth A Kern; Patricia M LoRusso
Journal:  Clin Cancer Res       Date:  2014-09-17       Impact factor: 12.531

4.  A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications.

Authors:  George W Wright; Da Wei Huang; James D Phelan; Zana A Coulibaly; Sandrine Roulland; Ryan M Young; James Q Wang; Roland Schmitz; Ryan D Morin; Jeffrey Tang; Aixiang Jiang; Aleksander Bagaev; Olga Plotnikova; Nikita Kotlov; Calvin A Johnson; Wyndham H Wilson; David W Scott; Louis M Staudt
Journal:  Cancer Cell       Date:  2020-04-13       Impact factor: 31.743

5.  Prognostic Significance of Diffuse Large B-Cell Lymphoma Cell of Origin Determined by Digital Gene Expression in Formalin-Fixed Paraffin-Embedded Tissue Biopsies.

Authors:  David W Scott; Anja Mottok; Daisuke Ennishi; George W Wright; Pedro Farinha; Susana Ben-Neriah; Robert Kridel; Garrett S Barry; Christoffer Hother; Pau Abrisqueta; Merrill Boyle; Barbara Meissner; Adele Telenius; Kerry J Savage; Laurie H Sehn; Graham W Slack; Christian Steidl; Louis M Staudt; Joseph M Connors; Lisa M Rimsza; Randy D Gascoyne
Journal:  J Clin Oncol       Date:  2015-08-03       Impact factor: 44.544

6.  Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma.

Authors:  Anupama Reddy; Jenny Zhang; Nicholas S Davis; Andrea B Moffitt; Cassandra L Love; Alexander Waldrop; Sirpa Leppa; Annika Pasanen; Leo Meriranta; Marja-Liisa Karjalainen-Lindsberg; Peter Nørgaard; Mette Pedersen; Anne O Gang; Estrid Høgdall; Tayla B Heavican; Waseem Lone; Javeed Iqbal; Qiu Qin; Guojie Li; So Young Kim; Jane Healy; Kristy L Richards; Yuri Fedoriw; Leon Bernal-Mizrachi; Jean L Koff; Ashley D Staton; Christopher R Flowers; Ora Paltiel; Neta Goldschmidt; Maria Calaminici; Andrew Clear; John Gribben; Evelyn Nguyen; Magdalena B Czader; Sarah L Ondrejka; Angela Collie; Eric D Hsi; Eric Tse; Rex K H Au-Yeung; Yok-Lam Kwong; Gopesh Srivastava; William W L Choi; Andrew M Evens; Monika Pilichowska; Manju Sengar; Nishitha Reddy; Shaoying Li; Amy Chadburn; Leo I Gordon; Elaine S Jaffe; Shawn Levy; Rachel Rempel; Tiffany Tzeng; Lanie E Happ; Tushar Dave; Deepthi Rajagopalan; Jyotishka Datta; David B Dunson; Sandeep S Dave
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

7.  Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.

Authors:  Bjoern Chapuy; Chip Stewart; Andrew J Dunford; Jaegil Kim; Atanas Kamburov; Robert A Redd; Mike S Lawrence; Margaretha G M Roemer; Amy J Li; Marita Ziepert; Annette M Staiger; Jeremiah A Wala; Matthew D Ducar; Ignaty Leshchiner; Ester Rheinbay; Amaro Taylor-Weiner; Caroline A Coughlin; Julian M Hess; Chandra S Pedamallu; Dimitri Livitz; Daniel Rosebrock; Mara Rosenberg; Adam A Tracy; Heike Horn; Paul van Hummelen; Andrew L Feldman; Brian K Link; Anne J Novak; James R Cerhan; Thomas M Habermann; Reiner Siebert; Andreas Rosenwald; Aaron R Thorner; Matthew L Meyerson; Todd R Golub; Rameen Beroukhim; Gerald G Wulf; German Ott; Scott J Rodig; Stefano Monti; Donna S Neuberg; Markus Loeffler; Michael Pfreundschuh; Lorenz Trümper; Gad Getz; Margaret A Shipp
Journal:  Nat Med       Date:  2018-04-30       Impact factor: 53.440

8.  Analysis of the coding genome of diffuse large B-cell lymphoma.

Authors:  Laura Pasqualucci; Vladimir Trifonov; Giulia Fabbri; Jing Ma; Davide Rossi; Annalisa Chiarenza; Victoria A Wells; Adina Grunn; Monica Messina; Oliver Elliot; Joseph Chan; Govind Bhagat; Amy Chadburn; Gianluca Gaidano; Charles G Mullighan; Raul Rabadan; Riccardo Dalla-Favera
Journal:  Nat Genet       Date:  2011-07-31       Impact factor: 38.330

9.  A Phase 1 study of the novel gamma-secretase inhibitor PF-03084014 in patients with T-cell acute lymphoblastic leukemia and T-cell lymphoblastic lymphoma.

Authors:  C Papayannidis; D J DeAngelo; W Stock; B Huang; M N Shaik; R Cesari; X Zheng; J M Reynolds; P A English; M Ozeck; J C Aster; F Kuo; D Huang; P D Lira; K R McLachlan; K A Kern; G Garcia-Manero; G Martinelli
Journal:  Blood Cancer J       Date:  2015-09-25       Impact factor: 11.037

10.  Mutations or copy number losses of CD58 and TP53 genes in diffuse large B cell lymphoma are independent unfavorable prognostic factors.

Authors:  Yang Cao; Tao Zhu; Peiling Zhang; Min Xiao; Shuhua Yi; Yan Yang; Qinlu Li; Shaoping Ling; Yafei Wang; Lili Gao; Li Zhu; Jue Wang; Na Wang; Liang Huang; Peihong Zhang; Qiongli Zhai; Lugui Qiu; Jianfeng Zhou
Journal:  Oncotarget       Date:  2016-12-13
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  3 in total

1.  Oncogenic Mutations and Tumor Microenvironment Alterations of Older Patients With Diffuse Large B-Cell Lymphoma.

Authors:  Yue Zhu; Di Fu; Qing Shi; Ziyang Shi; Lei Dong; Hongmei Yi; Zhenhua Liu; Yan Feng; Qian Liu; Hai Fang; Shu Cheng; Li Wang; Qiang Tian; Pengpeng Xu; Weili Zhao
Journal:  Front Immunol       Date:  2022-03-25       Impact factor: 7.561

2.  Mutational landscape of high-grade B-cell lymphoma with MYC-, BCL2 and/or BCL6 rearrangements characterized by whole-exome sequencing.

Authors:  Axel Künstner; Hanno M Witte; Jörg Riedl; Veronica Bernard; Stephanie Stölting; Hartmut Merz; Vito Olschewski; Wolfgang Peter; Julius Ketzer; Yannik Busch; Peter Trojok; Nikolas von Bubnoff; Hauke Busch; Alfred C Feller; Niklas Gebauer
Journal:  Haematologica       Date:  2022-08-01       Impact factor: 11.047

3.  Clinical Features and Prognostic Significance of NOTCH1 Mutations in Diffuse Large B-Cell Lymphoma.

Authors:  Zhongqi Li; Fang Yu; Wenle Ye; Liping Mao; Jiansong Huang; Yang Shao; Junrong Yan; Wenjuan Yu; Jie Jin; Jinghan Wang
Journal:  Front Oncol       Date:  2021-12-09       Impact factor: 6.244

  3 in total

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