Literature DB >> 32289277

A Probabilistic Classification Tool for Genetic Subtypes of Diffuse Large B Cell Lymphoma with Therapeutic Implications.

George W Wright1, Da Wei Huang2, James D Phelan2, Zana A Coulibaly2, Sandrine Roulland2, Ryan M Young2, James Q Wang2, Roland Schmitz2, Ryan D Morin3, Jeffrey Tang3, Aixiang Jiang3, Aleksander Bagaev4, Olga Plotnikova4, Nikita Kotlov4, Calvin A Johnson5, Wyndham H Wilson2, David W Scott6, Louis M Staudt7.   

Abstract

The development of precision medicine approaches for diffuse large B cell lymphoma (DLBCL) is confounded by its pronounced genetic, phenotypic, and clinical heterogeneity. Recent multiplatform genomic studies revealed the existence of genetic subtypes of DLBCL using clustering methodologies. Here, we describe an algorithm that determines the probability that a patient's lymphoma belongs to one of seven genetic subtypes based on its genetic features. This classification reveals genetic similarities between these DLBCL subtypes and various indolent and extranodal lymphoma types, suggesting a shared pathogenesis. These genetic subtypes also have distinct gene expression profiles, immune microenvironments, and outcomes following immunochemotherapy. Functional analysis of genetic subtype models highlights distinct vulnerabilities to targeted therapy, supporting the use of this classification in precision medicine trials. Published by Elsevier Inc.

Entities:  

Keywords:  A53; BN2; DLBCL; EZB; LymphGen; MCD; N1; ST2; genomic classification; lymphoma; naive Bayes

Mesh:

Substances:

Year:  2020        PMID: 32289277     DOI: 10.1016/j.ccell.2020.03.015

Source DB:  PubMed          Journal:  Cancer Cell        ISSN: 1535-6108            Impact factor:   31.743


  144 in total

1.  A refined cell-of-origin classifier with targeted NGS and artificial intelligence shows robust predictive value in DLBCL.

Authors:  Zijun Y Xu-Monette; Hongwei Zhang; Feng Zhu; Alexandar Tzankov; Govind Bhagat; Carlo Visco; Karen Dybkaer; April Chiu; Wayne Tam; Youli Zu; Eric D Hsi; Hua You; Jooryung Huh; Maurilio Ponzoni; Andrés J M Ferreri; Michael B Møller; Benjamin M Parsons; J Han van Krieken; Miguel A Piris; Jane N Winter; Fredrick B Hagemeister; Babak Shahbaba; Ivan De Dios; Hong Zhang; Yong Li; Bing Xu; Maher Albitar; Ken H Young
Journal:  Blood Adv       Date:  2020-07-28

Review 2.  Evolving insights into the genomic complexity and immune landscape of diffuse large B-cell lymphoma: opportunities for novel biomarkers.

Authors:  Siba El Hussein; Kenna R M Shaw; Francisco Vega
Journal:  Mod Pathol       Date:  2020-07-03       Impact factor: 7.842

3.  Sorting biologic subtypes of primary CNS lymphoma.

Authors:  Mark Roschewski; James D Phelan
Journal:  Blood       Date:  2021-03-18       Impact factor: 22.113

Review 4.  Treatment resistance in diffuse large B-cell lymphoma.

Authors:  Michael Y He; Robert Kridel
Journal:  Leukemia       Date:  2021-05-20       Impact factor: 11.528

5.  Immune escape mechanisms for TCRLBCL.

Authors:  Wing C Chan
Journal:  Blood       Date:  2021-03-11       Impact factor: 22.113

6.  Central nervous system prophylaxis in diffuse large B-cell lymphoma: a race to the bottom.

Authors:  Mark Roschewski
Journal:  Haematologica       Date:  2021-02-01       Impact factor: 9.941

7.  Notch activation is pervasive in SMZL and uncommon in DLBCL: implications for Notch signaling in B-cell tumors.

Authors:  Vignesh Shanmugam; Jeffrey W Craig; Laura K Hilton; Matthew H Nguyen; Christopher K Rushton; Kian Fahimdanesh; Scott Lovitch; Ben Ferland; David W Scott; Jon C Aster
Journal:  Blood Adv       Date:  2021-01-12

8.  The dangers of déjà vu: memory B cells as the cells of origin of ABC-DLBCLs.

Authors:  Leandro Venturutti; Ari M Melnick
Journal:  Blood       Date:  2020-11-12       Impact factor: 22.113

9.  EBV-associated primary CNS lymphoma occurring after immunosuppression is a distinct immunobiological entity.

Authors:  M K Gandhi; T Hoang; S C Law; S Brosda; K O'Rourke; J W D Tobin; F Vari; V Murigneux; L Fink; J Gunawardana; C Gould; H Oey; K Bednarska; S Delecluse; R U Trappe; L Merida de Long; M B Sabdia; G Bhagat; G Hapgood; E Blyth; L Clancy; J Wight; E Hawkes; L M Rimsza; A Maguire; K Bojarczuk; B Chapuy; C Keane
Journal:  Blood       Date:  2021-03-18       Impact factor: 22.113

10.  Harnessing lymphoma epigenetics to improve therapies.

Authors:  Haopeng Yang; Michael R Green
Journal:  Blood       Date:  2020-11-18       Impact factor: 22.113

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