Literature DB >> 33479249

Repeat DNA-PAINT suppresses background and non-specific signals in optical nanoscopy.

Alexander H Clowsley1, William T Kaufhold2,3, Tobias Lutz1, Anna Meletiou1, Lorenzo Di Michele3, Christian Soeller4.   

Abstract

DNA-PAINT is a versatile optical super-resolution technique relying on the transient binding of fluorescent DNA 'imagers' to target epitopes. Its performance in biological samples is often constrained by strong background signals and non-specific binding events, both exacerbated by high imager concentrations. Here we describe Repeat DNA-PAINT, a method that enables a substantial reduction in imager concentration, thus suppressing spurious signals. Additionally, Repeat DNA-PAINT reduces photoinduced target-site loss and can accelerate sampling, all without affecting spatial resolution.

Entities:  

Year:  2021        PMID: 33479249      PMCID: PMC7820506          DOI: 10.1038/s41467-020-20686-z

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  32 in total

1.  Ultra-high resolution imaging by fluorescence photoactivation localization microscopy.

Authors:  Samuel T Hess; Thanu P K Girirajan; Michael D Mason
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

2.  Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes.

Authors:  Mike Heilemann; Sebastian van de Linde; Mark Schüttpelz; Robert Kasper; Britta Seefeldt; Anindita Mukherjee; Philip Tinnefeld; Markus Sauer
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

3.  Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model.

Authors:  Thomas E Ouldridge; Ard A Louis; Jonathan P K Doye
Journal:  J Chem Phys       Date:  2011-02-28       Impact factor: 3.488

4.  Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.

Authors:  Benedict E K Snodin; Ferdinando Randisi; Majid Mosayebi; Petr Šulc; John S Schreck; Flavio Romano; Thomas E Ouldridge; Roman Tsukanov; Eyal Nir; Ard A Louis; Jonathan P K Doye
Journal:  J Chem Phys       Date:  2015-06-21       Impact factor: 3.488

5.  Super-resolution microscopy with DNA-PAINT.

Authors:  Joerg Schnitzbauer; Maximilian T Strauss; Thomas Schlichthaerle; Florian Schueder; Ralf Jungmann
Journal:  Nat Protoc       Date:  2017-05-18       Impact factor: 13.491

6.  A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics.

Authors:  J SantaLucia
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

Review 7.  Fluorescence nanoscopy in cell biology.

Authors:  Steffen J Sahl; Stefan W Hell; Stefan Jakobs
Journal:  Nat Rev Mol Cell Biol       Date:  2017-09-06       Impact factor: 94.444

8.  Quantitative super-resolution imaging with qPAINT.

Authors:  Ralf Jungmann; Maier S Avendaño; Mingjie Dai; Johannes B Woehrstein; Sarit S Agasti; Zachary Feiger; Avital Rodal; Peng Yin
Journal:  Nat Methods       Date:  2016-03-28       Impact factor: 28.547

9.  True Molecular Scale Visualization of Variable Clustering Properties of Ryanodine Receptors.

Authors:  Isuru Jayasinghe; Alexander H Clowsley; Ruisheng Lin; Tobias Lutz; Carl Harrison; Ellen Green; David Baddeley; Lorenzo Di Michele; Christian Soeller
Journal:  Cell Rep       Date:  2018-01-09       Impact factor: 9.423

10.  DNA hybridization kinetics: zippering, internal displacement and sequence dependence.

Authors:  Thomas E Ouldridge; Petr Sulc; Flavio Romano; Jonathan P K Doye; Ard A Louis
Journal:  Nucleic Acids Res       Date:  2013-08-08       Impact factor: 16.971

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  5 in total

1.  Fluorogenic DNA-PAINT for faster, low-background super-resolution imaging.

Authors:  Kenny K H Chung; Zhao Zhang; Phylicia Kidd; Yongdeng Zhang; Nathan D Williams; Bennett Rollins; Yang Yang; Chenxiang Lin; David Baddeley; Joerg Bewersdorf
Journal:  Nat Methods       Date:  2022-05-02       Impact factor: 47.990

Review 2.  Completing the canvas: advances and challenges for DNA-PAINT super-resolution imaging.

Authors:  Raman van Wee; Mike Filius; Chirlmin Joo
Journal:  Trends Biochem Sci       Date:  2021-07-08       Impact factor: 13.807

Review 3.  Amphiphilic DNA nanostructures for bottom-up synthetic biology.

Authors:  Roger Rubio-Sánchez; Giacomo Fabrini; Pietro Cicuta; Lorenzo Di Michele
Journal:  Chem Commun (Camb)       Date:  2021-11-30       Impact factor: 6.222

Review 4.  DNA Walkers for Biosensing Development.

Authors:  Lu Song; Ying Zhuge; Xiaolei Zuo; Min Li; Fang Wang
Journal:  Adv Sci (Weinh)       Date:  2022-04-22       Impact factor: 17.521

5.  Tracking single particles for hours via continuous DNA-mediated fluorophore exchange.

Authors:  Florian Stehr; Johannes Stein; Julian Bauer; Christian Niederauer; Ralf Jungmann; Kristina Ganzinger; Petra Schwille
Journal:  Nat Commun       Date:  2021-07-21       Impact factor: 14.919

  5 in total

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