Literature DB >> 33477842

Whole Genome Analysis of Environmental Pseudomonas mendocina Strains: Virulence Mechanisms and Phylogeny.

Lidia Ruiz-Roldán1, María de Toro2, Yolanda Sáenz1.   

Abstract

Pseudomonas mendocina is an environmental bacterium, rarely isolated in clinical specimens, although it has been described as producing endocarditis and sepsis. Little is known about its genome. Whole genome sequencing can be used to learn about the phylogeny, evolution, or pathogenicity of these isolates. Thus, the aim of this study was to analyze the resistome, virulome, and phylogenetic relationship of two P. mendocina strains, Ps542 and Ps799, isolated from a healthy Anas platyrhynchos fecal sample and a lettuce, respectively. Among all of the small number of P. mendocina genomes available in the National Center for Biotechnology Information (NCBI) repository, both strains were placed within one of two well-defined phylogenetic clusters. Both P. mendocina strains lacked antimicrobial resistance genes, but the Ps799 genome showed a MOBP3 family relaxase. Nevertheless, this study revealed that P. mendocina possesses an important number of virulence factors, including a leukotoxin, flagella, pili, and the Type 2 and Type 6 Secretion Systems, that could be responsible for their pathogenesis. More phenotypical and in vivo studies are needed to deepen the association with human infections and the potential P. mendocina pathogenicity.

Entities:  

Keywords:  Pseudomonas; evolution; microbial ecology; pan-genome; phylogeny; virulence

Mesh:

Substances:

Year:  2021        PMID: 33477842      PMCID: PMC7832885          DOI: 10.3390/genes12010115

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  61 in total

Review 1.  The diversity of conjugative relaxases and its application in plasmid classification.

Authors:  María Pilar Garcillán-Barcia; María Victoria Francia; Fernando de la Cruz
Journal:  FEMS Microbiol Rev       Date:  2009-05       Impact factor: 16.408

2.  Taxonomy of the aerobic pseudomonads: the properties of the Pseudomonas stutzeri group.

Authors:  N J Palleroni; M Doudoroff; R Y Stanier; R E Solánes; M Mandel
Journal:  J Gen Microbiol       Date:  1970-02

3.  Characterisation of VIM-2-producing Pseudomonas aeruginosa isolates from lower tract respiratory infections in a Spanish hospital.

Authors:  Alba Bellés; Jessica Bueno; Beatriz Rojo-Bezares; Carmen Torres; F Javier Castillo; Yolanda Sáenz; Cristina Seral
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2018-07-06       Impact factor: 3.267

4.  Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

Authors:  K E Nelson; C Weinel; I T Paulsen; R J Dodson; H Hilbert; V A P Martins dos Santos; D E Fouts; S R Gill; M Pop; M Holmes; L Brinkac; M Beanan; R T DeBoy; S Daugherty; J Kolonay; R Madupu; W Nelson; O White; J Peterson; H Khouri; I Hance; P Chris Lee; E Holtzapple; D Scanlan; K Tran; A Moazzez; T Utterback; M Rizzo; K Lee; D Kosack; D Moestl; H Wedler; J Lauber; D Stjepandic; J Hoheisel; M Straetz; S Heim; C Kiewitz; J A Eisen; K N Timmis; A Düsterhöft; B Tümmler; C M Fraser
Journal:  Environ Microbiol       Date:  2002-12       Impact factor: 5.491

5.  Analysis of the core genome and pangenome of Pseudomonas putida.

Authors:  Zulema Udaondo; Lázaro Molina; Ana Segura; Estrella Duque; Juan L Ramos
Journal:  Environ Microbiol       Date:  2015-09-16       Impact factor: 5.491

6.  CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database.

Authors:  Baofeng Jia; Amogelang R Raphenya; Brian Alcock; Nicholas Waglechner; Peiyao Guo; Kara K Tsang; Briony A Lago; Biren M Dave; Sheldon Pereira; Arjun N Sharma; Sachin Doshi; Mélanie Courtot; Raymond Lo; Laura E Williams; Jonathan G Frye; Tariq Elsayegh; Daim Sardar; Erin L Westman; Andrew C Pawlowski; Timothy A Johnson; Fiona S L Brinkman; Gerard D Wright; Andrew G McArthur
Journal:  Nucleic Acids Res       Date:  2016-10-26       Impact factor: 16.971

7.  IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets.

Authors:  Claire Bertelli; Matthew R Laird; Kelly P Williams; Britney Y Lau; Gemma Hoad; Geoffrey L Winsor; Fiona S L Brinkman
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

Review 8.  Pseudomonas aeruginosa Lifestyle: A Paradigm for Adaptation, Survival, and Persistence.

Authors:  M Fata Moradali; Shirin Ghods; Bernd H A Rehm
Journal:  Front Cell Infect Microbiol       Date:  2017-02-15       Impact factor: 5.293

9.  A degenerate primer MOB typing (DPMT) method to classify gamma-proteobacterial plasmids in clinical and environmental settings.

Authors:  Andrés Alvarado; M Pilar Garcillán-Barcia; Fernando de la Cruz
Journal:  PLoS One       Date:  2012-07-11       Impact factor: 3.240

10.  A global genomic approach uncovers novel components for twitching motility-mediated biofilm expansion in Pseudomonas aeruginosa.

Authors:  Laura M Nolan; Cynthia B Whitchurch; Lars Barquist; Marilyn Katrib; Christine J Boinett; Matthew Mayho; David Goulding; Ian G Charles; Alain Filloux; Julian Parkhill; Amy K Cain
Journal:  Microb Genom       Date:  2018-11-01
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