Literature DB >> 33474469

Complete chloroplast genome sequence of a subtropical tree, Parasassafras confertiflorum (Lauranceae).

Qiong Liao1, Tinghong Ye1, Yu Song2,3.   

Abstract

Parasassafras confertiflorum (Meisn.) D.G. Long is the single tree species of the genus Parasassafras D.G. Long in the family Lauraceae. To better determine its phylogenetic location with respect to the related Lauraceae species, the complete chloroplast genome of P. confertiflorum was sequenced. The whole plastome is 152,555 bp in length, consisting of a pair of inverted repeat (IR) regions of 20,079 bp, one large single copy (LSC) region of 93,604 bp, and one small single copy (SSC) region of 18,793 bp. The genome contains 127 genes, including 83 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole plastome is 39.1%. Further, maximum likelihoodphylogenetic analyses were conducted using 34 complete plastomes of the Lauraceae, which support close relationships between P. confertiflorum and Actinodaphne trichocarpa, Lindera benzoin, L. latifolia, L. metcalfiana, L. robusta, and Neolitsea sericea rather than Laurus nobilis or Sinosassafras flavinervium.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Lauraceae; Parasassafras confertiflorum; chloroplast genome; phylogenetic analyses

Year:  2018        PMID: 33474469      PMCID: PMC7799558          DOI: 10.1080/23802359.2018.1532331

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  3 in total

1.  The complete plastid genome of a medicinal tree Lindera chienii Cheng 1934 (Lauraceae: Laureae).

Authors:  Chao Liu; Huanhuan Chen; Jian Cai; Lihong Han
Journal:  Mitochondrial DNA B Resour       Date:  2022-07-04       Impact factor: 0.610

2.  The complete plastid genome of an evergreen tree Litsea elongata (Lauraceae: Laureae).

Authors:  Chao Liu; Huanhuan Chen; Lihong Han; Lizhou Tang
Journal:  Mitochondrial DNA B Resour       Date:  2020-06-17       Impact factor: 0.658

3.  A comparative analysis of complete chloroplast genomes of seven Ocotea species (Lauraceae) confirms low sequence divergence within the Ocotea complex.

Authors:  Dimitrij Trofimov; Daniel Cadar; Jonas Schmidt-Chanasit; Pedro Luís Rodrigues de Moraes; Jens G Rohwer
Journal:  Sci Rep       Date:  2022-01-21       Impact factor: 4.379

  3 in total

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