Literature DB >> 33474263

Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered "Vulnerable" in Southeast Asia.

Zhi-Xin Zhu1, Wei-Xue Mu2, Jian-Hua Wang1, Jin-Ran Zhang1, Kun-Kun Zhao1, Cynthia Ross Friedman3, Hua-Feng Wang1.   

Abstract

Dracaena cambodiana (Asparagaceae) is a treelike plant ranging from 3 to 10 m tall. It grows in low-elevation forests (0-300 m) having dry and sandy soils. It is distributed in Southern Hainan Island in China and other Southeast Asian countries (e.g. Cambodia, Laos, Thailand and Vietnam). The dried resin can be used medicinally as a substitute for that of Dracaena cochinchinensis. It has been ranked as a Vulnerable (VU) species in China. Here we report and characterize the complete plastid genome sequence of D. cambodiana. The complete plastome is 156,697 bp in length. It contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,526 bp, a Large Single-Copy (LSC) region of 84,988 bp and a Small Single-Copy (SSC) region of 18,657 bp. The plastome contains 113 genes, consisting of 76 unique protein-coding genes, 30 unique tRNA genes, four unique rRNA genes and three pseudogenes (i.e. matK, infA, ndhF). The overall A/T content in the plastome of D. cambodiana is 62.4%. We performed phylogenetic analyses using the entire plastome, including spacers, introns, etc., and we determined that D. cambodiana and Maianthemum bicolor were closely related. The complete plastome sequence of D. cambodiana will provide a useful resource for the conservation genetics of this species as well as for phylogenetic studies in Asparagales.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Asparagaceae; Asparagales; Dracaena cambodiana; illumina sequencing; phylogenetic analysis; plastome

Year:  2018        PMID: 33474263      PMCID: PMC7800030          DOI: 10.1080/23802359.2018.1473740

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  15 in total

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Journal:  Mitochondrial DNA B Resour       Date:  2020-01-08       Impact factor: 0.658

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Journal:  Mitochondrial DNA B Resour       Date:  2020-08-17       Impact factor: 0.658

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Journal:  Mitochondrial DNA B Resour       Date:  2020-01-31       Impact factor: 0.658

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Journal:  Mitochondrial DNA B Resour       Date:  2020-07-11       Impact factor: 0.658

9.  The complete chloroplast genome sequence of a Citrus australasica cultivar (Rutaceae).

Authors:  Qin-Nan Cai; Hong-Xin Wang; Da-Juan Chen; Xiu-Rong Ke; Zhi-Xin Zhu; Hua-Feng Wang
Journal:  Mitochondrial DNA B Resour       Date:  2021-12-15       Impact factor: 0.658

10.  Complete plastome sequence of Bridelia tomentosa Blume (Phyllanthaceae): a medicinal shrub species in South Asia.

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Journal:  Mitochondrial DNA B Resour       Date:  2021-07-15       Impact factor: 0.658

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