Literature DB >> 33458104

Complete plastome sequence of Cymbidium tortisepalum var. longibracteatum (Y.S.Wu & S.C.Chen) S.C.Chen & Z.J.Liu (Orchidaceae): an endangered (EN) plant species in Southwest China.

Da-Juan Chen1, Hong-Xin Wang1, Zhi-Xin Zhu1, Hua-Feng Wang1.   

Abstract

Cymbidium tortisepalum (Orchidaceae) has been ranked as an endangered (EN) herb species in China. In this study, we report and characterize the complete plastid genome sequence of C. tortisepalum var. longibracteatum in order to provide genomic resources helpful for promoting its conservation and garden utilization. The complete plastome is 150,198 bp in length and contains the typical quadripartite structure of angiosperm, including two Inverted Repeat (IRs) regions of 25,682 bp, a Large Single-Copy (LSC) region of 85,035 bp and a Small Single-Copy (SSC) region of 13,799 bp. The plastome contains 111 genes, consisting of 77 unique protein-coding genes, 30 unique tRNA gene and 4 unique rRNA genes. The overall A/T content in the plastome of C. tortisepalum var. longibracteatum is 62.90%. The complete plastome sequence of C. tortisepalum var. longibracteatum will provide a useful resource for the conservation and garden utilization of this species as well as for the phylogenetic studies of Orchidaceae.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Cymbidium tortisepalum var. longibracteatum; Orchidaceae; genome structure; phylogeny; plastome

Year:  2020        PMID: 33458104      PMCID: PMC7782035          DOI: 10.1080/23802359.2020.1810157

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  4 in total

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Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

2.  Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered "Vulnerable" in Southeast Asia.

Authors:  Zhi-Xin Zhu; Wei-Xue Mu; Jian-Hua Wang; Jin-Ran Zhang; Kun-Kun Zhao; Cynthia Ross Friedman; Hua-Feng Wang
Journal:  Mitochondrial DNA B Resour       Date:  2018-05-21       Impact factor: 0.658

3.  Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses.

Authors:  Jun-Bo Yang; Min Tang; Hong-Tao Li; Zhi-Rong Zhang; De-Zhu Li
Journal:  BMC Evol Biol       Date:  2013-04-18       Impact factor: 3.260

4.  Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.

Authors:  Christoph Hahn; Lutz Bachmann; Bastien Chevreux
Journal:  Nucleic Acids Res       Date:  2013-05-09       Impact factor: 16.971

  4 in total

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