Literature DB >> 33473612

Complete mitochondrial genome sequence of E. suratensis revealed by next generation sequencing.

Sudip K Mohanta1, Subrat K Swain2, Sofia P Das2, Amrita Bit2, Gargee Das2, Sanghamitra Pradhan2, Jitendra K Sundaray2, P Jayasankar2, A S Ninawe3, Paramananda Das2.   

Abstract

The complete mitochondrial genome of Etroplus suratensis, the Green chromide cichlid, was determined for the first time through NGS method. The genome is 16,467 bp (Accession no. KU301747) in length and consisted of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and one control region. Organization of genes and their order are in accordance with other vertebrates. The overall base composition on plus strand was A: 28.3%, G: 15.2%, C: 30.9%, T: 25.6%, and the A + T content 53.9%. The control region contains a putative termination-associated sequence and three conserved sequence blocks. This mitogenome sequence data would play an important role in population genetics and phylogenetics of cichlid fish of India.
© 2016 ICAR-Central Institute of Freshwater Aquaculture. Published by Informa UK Limited, trading as Taylor & Francis.

Entities:  

Keywords:  Etroplus suratensis; NGS method; cichlidae; mitogenome; sequence

Year:  2016        PMID: 33473612      PMCID: PMC7800130          DOI: 10.1080/23802359.2016.1176877

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  1 in total

1.  The complete mitochondrial genome of an endemic cichlid Etroplus canarensis from Western Ghats, India (Perciformes: Cichlidae) and molecular phylogenetic analysis.

Authors:  Joelin Joseph; Sandeep Sreeedharan; Sanil George; Mano Mohan Antony
Journal:  Mol Biol Rep       Date:  2022-01-13       Impact factor: 2.316

  1 in total

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