Literature DB >> 33469874

Genome-wide identification and characterization of Lectin receptor-like kinase (LecRLK) genes in mungbean (Vigna radiata L. Wilczek).

Poornima Singh1, Awdhesh Kumar Mishra2, Chandra Mohan Singh3.   

Abstract

Lectins are a diverse group of proteins found throughout plant species. Numerous lectins are involved in many important processes such as organogenesis, defense mechanism, signaling, and stress response. Although the mungbean whole genome sequence has been published, distribution, diversification, and gene structure of lectin genes in mungbean are still unknown. A total of 73 putative lectin genes with kinase domain have been identified through BLAST and HMM profiling. Furthermore, these sequences could be classified into three families, such as G-type, L-type, and C-type VrLecRLKs. 59 out of 73 VrLecRLKs were distributed on to 11 chromosomes, whereas rest could not be anchored onto any specific chromosome. Gene structure analysis revealed a varying number of exons in 73 VrLecRLK genes. Gene ontology annotations were grouped into three categories like biological processes, cellular components and molecular functions, which were associated with signaling pathways, defense responses, transferase activity, binding activity, and kinase activity. The comprehensive and systematic studies of LecRLK genes family provides a reference and foundation for further functional analysis of VrLecRLK genes in mungbean.

Entities:  

Keywords:  Exon; GO analysis; Kinase domain; Lectin RLK; Mungbean

Year:  2021        PMID: 33469874     DOI: 10.1007/s13353-021-00613-8

Source DB:  PubMed          Journal:  J Appl Genet        ISSN: 1234-1983            Impact factor:   3.240


  43 in total

1.  ExPASy: The proteomics server for in-depth protein knowledge and analysis.

Authors:  Elisabeth Gasteiger; Alexandre Gattiker; Christine Hoogland; Ivan Ivanyi; Ron D Appel; Amos Bairoch
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Arabidopsis L-type lectin receptor kinases: phylogeny, classification, and expression profiles.

Authors:  Klaas Bouwmeester; Francine Govers
Journal:  J Exp Bot       Date:  2009-09-22       Impact factor: 6.992

Review 3.  Legume genetic resources and transcriptome dynamics under abiotic stress conditions.

Authors:  Mostafa Abdelrahman; Sudisha Jogaiah; David J Burritt; Lam-Son Phan Tran
Journal:  Plant Cell Environ       Date:  2018-02-23       Impact factor: 7.228

4.  Nicotiana attenuata LECTIN RECEPTOR KINASE1 suppresses the insect-mediated inhibition of induced defense responses during Manduca sexta herbivory.

Authors:  Paola A Gilardoni; Christian Hettenhausen; Ian T Baldwin; Gustavo Bonaventure
Journal:  Plant Cell       Date:  2011-09-16       Impact factor: 11.277

Review 5.  How C-type lectins detect pathogens.

Authors:  Alessandra Cambi; Marjolein Koopman; Carl G Figdor
Journal:  Cell Microbiol       Date:  2005-04       Impact factor: 3.715

6.  Overexpression of L-type lectin-like protein kinase 1 confers pathogen resistance and regulates salinity response in Arabidopsis thaliana.

Authors:  Ping Huang; Hyun-Woo Ju; Ji-Hee Min; Xia Zhang; Su-Hyun Kim; Kwang-Yeol Yang; Cheol Soo Kim
Journal:  Plant Sci       Date:  2013-01-14       Impact factor: 4.729

Review 7.  Pivoting the plant immune system from dissection to deployment.

Authors:  Jeffery L Dangl; Diana M Horvath; Brian J Staskawicz
Journal:  Science       Date:  2013-08-16       Impact factor: 47.728

8.  Characterization of an Arabidopsis thaliana gene that defines a new class of putative plant receptor kinases with an extracellular lectin-like domain.

Authors:  C Hervé; P Dabos; J P Galaud; P Rougé; B Lescure
Journal:  J Mol Biol       Date:  1996-05-24       Impact factor: 5.469

9.  The lectin receptor kinase LecRK-I.9 is a novel Phytophthora resistance component and a potential host target for a RXLR effector.

Authors:  Klaas Bouwmeester; Mara de Sain; Rob Weide; Anne Gouget; Sofieke Klamer; Herve Canut; Francine Govers
Journal:  PLoS Pathog       Date:  2011-03-31       Impact factor: 6.823

10.  GSDS 2.0: an upgraded gene feature visualization server.

Authors:  Bo Hu; Jinpu Jin; An-Yuan Guo; He Zhang; Jingchu Luo; Ge Gao
Journal:  Bioinformatics       Date:  2014-12-10       Impact factor: 6.937

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