Literature DB >> 33469156

Crowding-induced opening of the mechanosensitive Piezo1 channel in silico.

John Smith Del Rosario1, Wesley Botello-Smith2, Wenjuan Jiang2, Siyuan Zhao1, Yi-Chun Lin2, Han Zhang2, Jérôme Lacroix3, Tibor Rohacs4, Yun Lyna Luo5.   

Abstract

Mechanosensitive Piezo1 channels are essential mechanotransduction proteins in eukaryotes. Their curved transmembrane domains, called arms, create a convex membrane deformation, or footprint, which is predicted to flatten in response to increased membrane tension. Here, using a hyperbolic tangent model, we show that, due to the intrinsic bending rigidity of the membrane, the overlap of neighboring Piezo1 footprints produces a flattening of the Piezo1 footprints and arms. Multiple all-atom molecular dynamics simulations of Piezo1 further reveal that this tension-independent flattening is accompanied by gating motions that open an activation gate in the pore. This open state recapitulates experimentally obtained ionic selectivity, unitary conductance, and mutant phenotypes. Tracking ion permeation along the open pore reveals the presence of intracellular and extracellular fenestrations acting as cation-selective sites. Simulations also reveal multiple potential binding sites for phosphatidylinositol 4,5-bisphosphate. We propose that the overlap of Piezo channel footprints may act as a cooperative mechanism to regulate channel activity.

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Year:  2021        PMID: 33469156      PMCID: PMC7815867          DOI: 10.1038/s42003-020-01600-1

Source DB:  PubMed          Journal:  Commun Biol        ISSN: 2399-3642


  52 in total

1.  Atomistic kinetic model for population shift and allostery in biomolecules.

Authors:  Dong Long; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2011-11-02       Impact factor: 15.419

2.  Piezo1 Channels Are Inherently Mechanosensitive.

Authors:  Ruhma Syeda; Maria N Florendo; Charles D Cox; Jennifer M Kefauver; Jose S Santos; Boris Martinac; Ardem Patapoutian
Journal:  Cell Rep       Date:  2016-11-08       Impact factor: 9.423

3.  Ion Permeation and Mechanotransduction Mechanisms of Mechanosensitive Piezo Channels.

Authors:  Qiancheng Zhao; Kun Wu; Jie Geng; Shaopeng Chi; Yanfeng Wang; Peng Zhi; Mingmin Zhang; Bailong Xiao
Journal:  Neuron       Date:  2016-02-25       Impact factor: 17.173

Review 4.  PIP(2) and proteins: interactions, organization, and information flow.

Authors:  Stuart McLaughlin; Jiyao Wang; Alok Gambhir; Diana Murray
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001-10-25

5.  Activation of TRPV1 channels inhibits mechanosensitive Piezo channel activity by depleting membrane phosphoinositides.

Authors:  Istvan Borbiro; Doreen Badheka; Tibor Rohacs
Journal:  Sci Signal       Date:  2015-02-10       Impact factor: 8.192

6.  Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles.

Authors:  Robert B Best; Xiao Zhu; Jihyun Shim; Pedro E M Lopes; Jeetain Mittal; Michael Feig; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2012-07-18       Impact factor: 6.006

7.  Structural basis of PIP2 activation of the classical inward rectifier K+ channel Kir2.2.

Authors:  Scott B Hansen; Xiao Tao; Roderick MacKinnon
Journal:  Nature       Date:  2011-08-28       Impact factor: 49.962

8.  Piezo1 ion channel pore properties are dictated by C-terminal region.

Authors:  Bertrand Coste; Swetha E Murthy; Jayanti Mathur; Manuela Schmidt; Yasmine Mechioukhi; Patrick Delmas; Ardem Patapoutian
Journal:  Nat Commun       Date:  2015-05-26       Impact factor: 14.919

9.  A protein interaction mechanism for suppressing the mechanosensitive Piezo channels.

Authors:  Tingxin Zhang; Shaopeng Chi; Fan Jiang; Qiancheng Zhao; Bailong Xiao
Journal:  Nat Commun       Date:  2017-11-27       Impact factor: 14.919

10.  The mechanosensitive ion channel TRAAK is localized to the mammalian node of Ranvier.

Authors:  Stephen G Brohawn; Weiwei Wang; Annie Handler; Ernest B Campbell; Jürgen R Schwarz; Roderick MacKinnon
Journal:  Elife       Date:  2019-11-01       Impact factor: 8.140

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  14 in total

Review 1.  Protein assembly and crowding simulations.

Authors:  Lim Heo; Yuji Sugita; Michael Feig
Journal:  Curr Opin Struct Biol       Date:  2022-02-23       Impact factor: 6.809

2.  Characterizing the lipid fingerprint of the mechanosensitive channel Piezo2.

Authors:  Yiechang Lin; Amanda Buyan; Ben Corry
Journal:  J Gen Physiol       Date:  2022-07-21       Impact factor: 4.000

3.  Yoda1's energetic footprint on Piezo1 channels and its modulation by voltage and temperature.

Authors:  Tharaka D Wijerathne; Alper D Ozkan; Jérôme J Lacroix
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-11       Impact factor: 12.779

4.  TMEM120A/TACAN inhibits mechanically activated PIEZO2 channels.

Authors:  John Smith Del Rosario; Matthew Gabrielle; Yevgen Yudin; Tibor Rohacs
Journal:  J Gen Physiol       Date:  2022-07-12       Impact factor: 4.000

5.  Cellular Mechanosensitivity: Validation of an Adaptable 3D-Printed Device for Microindentation.

Authors:  Giulio Capponi; Martina Zambito; Igor Neri; Francesco Cottone; Maurizio Mattarelli; Massimo Vassalli; Silvia Caponi; Tullio Florio
Journal:  Nanomaterials (Basel)       Date:  2022-08-05       Impact factor: 5.719

Review 6.  Computational studies of Piezo1 yield insights into key lipid-protein interactions, channel activation, and agonist binding.

Authors:  Yiechang Lin; Amanda Buyan; Ben Corry
Journal:  Biophys Rev       Date:  2021-10-13

7.  Identification of Piezo1 channels in perivascular adipose tissue (PVAT) and their potential role in vascular function.

Authors:  Taylor R Miron; Emma D Flood; Nathan R Tykocki; Janice M Thompson; Stephanie W Watts
Journal:  Pharmacol Res       Date:  2021-11-21       Impact factor: 10.334

8.  Trends in Piezo Channel Research Over the Past Decade: A Bibliometric Analysis.

Authors:  Jing Guo; Dongmei Gu; Tingting Zhao; Zhanhao Zhao; Yajun Xiong; Mengzhu Sun; Chen Xin; Yujie Zhang; Lixia Pei; Jianhua Sun
Journal:  Front Pharmacol       Date:  2021-04-15       Impact factor: 5.810

9.  Mechanical properties of anionic asymmetric bilayers from atomistic simulations.

Authors:  Wenjuan Jiang; Yi-Chun Lin; Yun Lyna Luo
Journal:  J Chem Phys       Date:  2021-06-14       Impact factor: 4.304

10.  Spatiotemporal dynamics of PIEZO1 localization controls keratinocyte migration during wound healing.

Authors:  Wei-Zheng Zeng; Elizabeth L Evans; Seung-Hyun Woo; Jesse R Holt; Shang Ma; Hamid Abuwarda; Meaghan Loud; Ardem Patapoutian; Medha M Pathak
Journal:  Elife       Date:  2021-09-27       Impact factor: 8.140

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