Literature DB >> 35340596

Computational studies of Piezo1 yield insights into key lipid-protein interactions, channel activation, and agonist binding.

Yiechang Lin1, Amanda Buyan1, Ben Corry1.   

Abstract

Piezo1 is a mechanically gated ion channel responsible for converting mechanical stimuli into electrical signals in mammals, playing critical roles in vascular development and blood pressure regulation. Dysfunction of Piezo1 has been linked to several disorders, including hereditary xerocytosis (gain-of-function) and generalised lymphatic dysplasia (loss-of-function), as well as a common polymorphism associated with protection against severe malaria. Despite the important physiological roles played by Piezo1, its recent discovery means that many aspects underlying its function are areas of active research. The recently elucidated cryo-EM structures of Piezo1 have paved the way for computational studies, specifically molecular dynamic simulations, to examine the protein's behaviour at an atomistic level. These studies provide valuable insights to Piezo1's interactions with surrounding membrane lipids, a small-molecule agonist named Yoda1, and Piezo1's activation mechanisms. In this review, we summarise and discuss recent papers which use computational techniques in combination with experimental approaches such as electrophysiology/mutagenesis studies to investigate Piezo1. We also discuss how to mitigate some shortcomings associated with using computational techniques to study Piezo1 and outline potential avenues of future research. © International Union for Pure and Applied Biophysics (IUPAB) and Springer-Verlag GmbH Germany, part of Springer Nature 2021.

Entities:  

Keywords:  Channel activation; Computational techniques; Piezo1

Year:  2021        PMID: 35340596      PMCID: PMC8921400          DOI: 10.1007/s12551-021-00847-0

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  68 in total

Review 1.  TRP channels interaction with lipids and its implications in disease.

Authors:  Francisco J Taberner; Gregorio Fernández-Ballester; Asia Fernández-Carvajal; Antonio Ferrer-Montiel
Journal:  Biochim Biophys Acta       Date:  2015-03-30

2.  Novel mechanisms of PIEZO1 dysfunction in hereditary xerocytosis.

Authors:  Edyta Glogowska; Eve R Schneider; Yelena Maksimova; Vincent P Schulz; Kimberly Lezon-Geyda; John Wu; Kottayam Radhakrishnan; Siobán B Keel; Donald Mahoney; Alison M Freidmann; Rachel A Altura; Elena O Gracheva; Sviatoslav N Bagriantsev; Theodosia A Kalfa; Patrick G Gallagher
Journal:  Blood       Date:  2017-07-17       Impact factor: 22.113

3.  The MARTINI force field: coarse grained model for biomolecular simulations.

Authors:  Siewert J Marrink; H Jelger Risselada; Serge Yefimov; D Peter Tieleman; Alex H de Vries
Journal:  J Phys Chem B       Date:  2007-06-15       Impact factor: 2.991

4.  Molecular Dynamics Simulations of Membrane Proteins: An Overview.

Authors:  Kenneth Goossens; Hans De Winter
Journal:  J Chem Inf Model       Date:  2018-10-24       Impact factor: 4.956

Review 5.  Biophysical Principles of Ion-Channel-Mediated Mechanosensory Transduction.

Authors:  Charles D Cox; Navid Bavi; Boris Martinac
Journal:  Cell Rep       Date:  2019-10-01       Impact factor: 9.423

6.  Mutations in the mechanotransduction protein PIEZO1 are associated with hereditary xerocytosis.

Authors:  Ryan Zarychanski; Vincent P Schulz; Brett L Houston; Yelena Maksimova; Donald S Houston; Brian Smith; Jesse Rinehart; Patrick G Gallagher
Journal:  Blood       Date:  2012-04-23       Impact factor: 22.113

7.  Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations.

Authors:  Tsjerk A Wassenaar; Helgi I Ingólfsson; Rainer A Böckmann; D Peter Tieleman; Siewert J Marrink
Journal:  J Chem Theory Comput       Date:  2015-04-24       Impact factor: 6.006

8.  Cholesterol increases kinetic, energetic, and mechanical stability of the human β2-adrenergic receptor.

Authors:  Michael Zocher; Cheng Zhang; Søren G F Rasmussen; Brian K Kobilka; Daniel J Müller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-14       Impact factor: 11.205

9.  Structural investigation of MscL gating using experimental data and coarse grained MD simulations.

Authors:  Evelyne Deplazes; Martti Louhivuori; Dylan Jayatilaka; Siewert J Marrink; Ben Corry
Journal:  PLoS Comput Biol       Date:  2012-09-20       Impact factor: 4.475

10.  Disruption of membrane cholesterol organization impairs the activity of PIEZO1 channel clusters.

Authors:  Pietro Ridone; Elvis Pandzic; Massimo Vassalli; Charles D Cox; Alexander Macmillan; Philip A Gottlieb; Boris Martinac
Journal:  J Gen Physiol       Date:  2020-08-03       Impact factor: 4.086

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