Literature DB >> 33467000

X-Linked Retinitis Pigmentosa Caused by Non-Canonical Splice Site Variants in RPGR.

Friederike Kortüm1, Sinja Kieninger2, Pascale Mazzola3, Susanne Kohl2, Bernd Wissinger2, Holger Prokisch4,5, Katarina Stingl1, Nicole Weisschuh2.   

Abstract

We aimed to validate the effect of non-canonical splice site variants in the RPGR gene in five patients from four families diagnosed with retinitis pigmentosa. Four variants located in intron 2 (c.154 + 3_154 + 6del), intron 3 (c.247 + 5G>A), intron 7 (c.779-5T>G), and intron 13 (c.1573-12A>G), respectively, were analyzed by means of in vitro splice assays. Splicing analysis revealed different aberrant splicing events, including exon skipping and intronic nucleotide addition, which are predicted to lead either to an in-frame deletion affecting relevant protein domains or to a frameshift of the open reading frame. Our data expand the landscape of pathogenic variants in RPGR, thereby increasing the genetic diagnostic rate in retinitis pigmentosa and allowing patients harboring the analyzed variants to be enrolled in clinical trials.

Entities:  

Keywords:  RPGR; X-linked; in vitro splice assay; non-canonical splice site variant; retinitis pigmentosa

Mesh:

Substances:

Year:  2021        PMID: 33467000      PMCID: PMC7830253          DOI: 10.3390/ijms22020850

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  40 in total

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Journal:  Arch Ophthalmol       Date:  2007-02

2.  A novel missense mutation of RPGR identified from retinitis pigmentosa affects splicing of the ORF15 region and causes loss of transcript heterogeneity.

Authors:  Yan-Shan Liu; Jia-Qi Pan; Ji-Feng Wan; Chun-Yan Ren; Zhou-Heng Xu; Xu-Bin Pan; Ruo-Nan Gao; Shao-Qiang Liu; Jia-Li Zhang; Qian-Hao Yao; Ji-Hong Wang; En-Min Li; Jun-Hua Rao; Ping Hou; Jian-Huan Chen
Journal:  Biochem Biophys Res Commun       Date:  2020-08-09       Impact factor: 3.575

Review 3.  Retinitis pigmentosa.

Authors:  R A Pagon
Journal:  Surv Ophthalmol       Date:  1988 Nov-Dec       Impact factor: 6.048

4.  Mutation- and tissue-specific alterations of RPGR transcripts.

Authors:  Fabian Schmid; Esther Glaus; Frans P M Cremers; Barbara Kloeckener-Gruissem; Wolfgang Berger; John Neidhardt
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-10-15       Impact factor: 4.799

5.  The Spectrum of Structural and Functional Abnormalities in Female Carriers of Pathogenic Variants in the RPGR Gene.

Authors:  Mays Talib; Mary J van Schooneveld; Caroline Van Cauwenbergh; Jan Wijnholds; Jacoline B Ten Brink; Ralph J Florijn; Nicoline E Schalij-Delfos; Gislin Dagnelie; Maria M van Genderen; Elfride De Baere; Magda A Meester-Smoor; Julie De Zaeytijd; Frans P M Cremers; L Ingeborgh van den Born; Alberta A Thiadens; Carel B Hoyng; Caroline C Klaver; Bart P Leroy; Arthur A Bergen; Camiel J F Boon
Journal:  Invest Ophthalmol Vis Sci       Date:  2018-08-01       Impact factor: 4.799

6.  Clinically Focused Molecular Investigation of 1000 Consecutive Families with Inherited Retinal Disease.

Authors:  Edwin M Stone; Jeaneen L Andorf; S Scott Whitmore; Adam P DeLuca; Joseph C Giacalone; Luan M Streb; Terry A Braun; Robert F Mullins; Todd E Scheetz; Val C Sheffield; Budd A Tucker
Journal:  Ophthalmology       Date:  2017-05-27       Impact factor: 12.079

7.  A splice site mutation in the PAX6 gene which induces exon skipping causes autosomal dominant inherited aniridia.

Authors:  Nicole Weisschuh; Bernd Wissinger; Eugen Gramer
Journal:  Mol Vis       Date:  2012-03-29       Impact factor: 2.367

8.  Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Authors:  Sue Richards; Nazneen Aziz; Sherri Bale; David Bick; Soma Das; Julie Gastier-Foster; Wayne W Grody; Madhuri Hegde; Elaine Lyon; Elaine Spector; Karl Voelkerding; Heidi L Rehm
Journal:  Genet Med       Date:  2015-03-05       Impact factor: 8.822

9.  Phenotype Driven Analysis of Whole Genome Sequencing Identifies Deep Intronic Variants that Cause Retinal Dystrophies by Aberrant Exonization.

Authors:  Matteo Di Scipio; Erika Tavares; Shriya Deshmukh; Isabelle Audo; Kit Green-Sanderson; Yuliya Zubak; Fayçal Zine-Eddine; Alexander Pearson; Anjali Vig; Chen Yu Tang; Antonio Mollica; Jonathan Karas; Anupreet Tumber; Caberry W Yu; Gail Billingsley; Michael D Wilson; Christina Zeitz; Elise Héon; Ajoy Vincent
Journal:  Invest Ophthalmol Vis Sci       Date:  2020-08-03       Impact factor: 4.799

10.  Experience of targeted Usher exome sequencing as a clinical test.

Authors:  Thomas Besnard; Gema García-García; David Baux; Christel Vaché; Valérie Faugère; Lise Larrieu; Susana Léonard; Jose M Millan; Sue Malcolm; Mireille Claustres; Anne-Françoise Roux
Journal:  Mol Genet Genomic Med       Date:  2013-07-10       Impact factor: 2.183

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  2 in total

Review 1.  Genetic dissection of non-syndromic retinitis pigmentosa.

Authors:  Aarti Bhardwaj; Anshu Yadav; Manoj Yadav; Mukesh Tanwar
Journal:  Indian J Ophthalmol       Date:  2022-07       Impact factor: 2.969

Review 2.  Next-Generation Sequencing Applications for Inherited Retinal Diseases.

Authors:  Adrian Dockery; Laura Whelan; Pete Humphries; G Jane Farrar
Journal:  Int J Mol Sci       Date:  2021-05-26       Impact factor: 5.923

  2 in total

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