Literature DB >> 34073611

Next-Generation Sequencing Applications for Inherited Retinal Diseases.

Adrian Dockery1, Laura Whelan1, Pete Humphries1, G Jane Farrar1.   

Abstract

Inherited retinal diseases (IRDs) represent a collection of phenotypically and genetically diverse conditions. IRDs phenotype(s) can be isolated to the eye or can involve multiple tissues. These conditions are associated with diverse forms of inheritance, and variants within the same gene often can be associated with multiple distinct phenotypes. Such aspects of the IRDs highlight the difficulty met when establishing a genetic diagnosis in patients. Here we provide an overview of cutting-edge next-generation sequencing techniques and strategies currently in use to maximise the effectivity of IRD gene screening. These techniques have helped researchers globally to find elusive causes of IRDs, including copy number variants, structural variants, new IRD genes and deep intronic variants, among others. Resolving a genetic diagnosis with thorough testing enables a more accurate diagnosis and more informed prognosis and should also provide information on inheritance patterns which may be of particular interest to patients of a child-bearing age. Given that IRDs are heritable conditions, genetic counselling may be offered to help inform family planning, carrier testing and prenatal screening. Additionally, a verified genetic diagnosis may enable access to appropriate clinical trials or approved medications that may be available for the condition.

Entities:  

Keywords:  diagnostics; eye; genetic diagnosis; genomics; inherited retinal disease; macula; rare disease; retina; sequencing; variant interpretation

Year:  2021        PMID: 34073611     DOI: 10.3390/ijms22115684

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  136 in total

1.  Inherited retinal disease in Norway - a characterization of current clinical and genetic knowledge.

Authors:  Josephine Prener Holtan; Kaja Kristine Selmer; Ketil Riddervold Heimdal; Ragnheiður Bragadóttir
Journal:  Acta Ophthalmol       Date:  2019-08-19       Impact factor: 3.761

2.  ATP-binding cassette subfamily A, member 4 intronic variants c.4773+3A>G and c.5461-10T>C cause Stargardt disease due to defective splicing.

Authors:  Frida Jonsson; Ida Maria Westin; Lennart Österman; Ola Sandgren; Marie Burstedt; Monica Holmberg; Irina Golovleva
Journal:  Acta Ophthalmol       Date:  2018-02-20       Impact factor: 3.761

3.  Enhanced sensitivity for detection of low-level germline mosaic RB1 mutations in sporadic retinoblastoma cases using deep semiconductor sequencing.

Authors:  Zhao Chen; Kimberly Moran; Jennifer Richards-Yutz; Erik Toorens; Daniel Gerhart; Tapan Ganguly; Carol L Shields; Arupa Ganguly
Journal:  Hum Mutat       Date:  2013-12-20       Impact factor: 4.878

4.  Identification of an RP1 prevalent founder mutation and related phenotype in Spanish patients with early-onset autosomal recessive retinitis.

Authors:  Almudena Avila-Fernandez; Marta Corton; Koji M Nishiguchi; Nelida Muñoz-Sanz; Belen Benavides-Mori; Fiona Blanco-Kelly; Rosa Riveiro-Alvarez; Blanca Garcia-Sandoval; Carlo Rivolta; Carmen Ayuso
Journal:  Ophthalmology       Date:  2012-08-20       Impact factor: 12.079

5.  A 73,128 bp de novo deletion encompassing the OPN1LW/OPN1MW gene cluster in sporadic Blue Cone Monochromacy: a case report.

Authors:  Elena Buena-Atienza; Fadi Nasser; Susanne Kohl; Bernd Wissinger
Journal:  BMC Med Genet       Date:  2018-06-26       Impact factor: 2.103

6.  Exploring the Genetic Landscape of Retinal Diseases in North-Western Pakistan Reveals a High Degree of Autozygosity and a Prevalent Founder Mutation in ABCA4.

Authors:  Atta Ur Rehman; Virginie G Peter; Mathieu Quinodoz; Abdur Rashid; Syed Akhtar Khan; Andrea Superti-Furga; Carlo Rivolta
Journal:  Genes (Basel)       Date:  2019-12-21       Impact factor: 4.096

7.  Copy number variations and multiallelic variants in Korean patients with Leber congenital amaurosis.

Authors:  Dongheon Surl; Saeam Shin; Seung-Tae Lee; Jong Rak Choi; Junwon Lee; Suk Ho Byeon; Sueng-Han Han; Hyun Taek Lim; Jinu Han
Journal:  Mol Vis       Date:  2020-02-24       Impact factor: 2.367

8.  ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing.

Authors:  Robert C Green; Jonathan S Berg; Wayne W Grody; Sarah S Kalia; Bruce R Korf; Christa L Martin; Amy L McGuire; Robert L Nussbaum; Julianne M O'Daniel; Kelly E Ormond; Heidi L Rehm; Michael S Watson; Marc S Williams; Leslie G Biesecker
Journal:  Genet Med       Date:  2013-06-20       Impact factor: 8.822

9.  NGS-based Molecular diagnosis of 105 eyeGENE(®) probands with Retinitis Pigmentosa.

Authors:  Zhongqi Ge; Kristen Bowles; Kerry Goetz; Hendrik P N Scholl; Feng Wang; Xinjing Wang; Shan Xu; Keqing Wang; Hui Wang; Rui Chen
Journal:  Sci Rep       Date:  2015-12-15       Impact factor: 4.379

10.  Biallelic sequence and structural variants in RAX2 are a novel cause for autosomal recessive inherited retinal disease.

Authors:  Stijn Van de Sompele; Claire Smith; Marianthi Karali; Marta Corton; Kristof Van Schil; Frank Peelman; Timothy Cherry; Toon Rosseel; Hannah Verdin; Julien Derolez; Thalia Van Laethem; Kamron N Khan; Martin McKibbin; Carmel Toomes; Manir Ali; Annalaura Torella; Francesco Testa; Belen Jimenez; Francesca Simonelli; Julie De Zaeytijd; Jenneke Van den Ende; Bart P Leroy; Frauke Coppieters; Carmen Ayuso; Chris F Inglehearn; Sandro Banfi; Elfride De Baere
Journal:  Genet Med       Date:  2018-10-31       Impact factor: 8.822

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  7 in total

1.  [Diagnosis of inherited retinal dystrophies. Relevance of molecular genetic testing from the patient's perspective].

Authors:  Ulrich Kellner; Sandra Jansen; Franziska Bucher; Katarina Stingl
Journal:  Ophthalmologie       Date:  2022-03-21

2.  Clinical exome sequencing for inherited retinal degenerations at a tertiary care center.

Authors:  Mythily Ganapathi; Amanda Thomas-Wilson; Christie Buchovecky; Avinash Dharmadhikari; Subit Barua; Winston Lee; Merry Z C Ruan; Megan Soucy; Sara Ragi; Joy Tanaka; Lorraine N Clark; Ali B Naini; Jun Liao; Mahesh Mansukhani; Stephen Tsang; Vaidehi Jobanputra
Journal:  Sci Rep       Date:  2022-06-07       Impact factor: 4.996

3.  A comprehensive WGS-based pipeline for the identification of new candidate genes in inherited retinal dystrophies.

Authors:  María González-Del Pozo; Elena Fernández-Suárez; Nereida Bravo-Gil; Cristina Méndez-Vidal; Marta Martín-Sánchez; Enrique Rodríguez-de la Rúa; Manuel Ramos-Jiménez; María José Morillo-Sánchez; Salud Borrego; Guillermo Antiñolo
Journal:  NPJ Genom Med       Date:  2022-03-04       Impact factor: 8.617

4.  Electrophysiology-Guided Genetic Characterisation Maximises Molecular Diagnosis in an Irish Paediatric Inherited Retinal Degeneration Population.

Authors:  Julia Zhu; Kirk A J Stephenson; Adrian Dockery; Jacqueline Turner; James J O'Byrne; Susan Fitzsimon; G Jane Farrar; D Ian Flitcroft; David J Keegan
Journal:  Genes (Basel)       Date:  2022-03-29       Impact factor: 4.141

5.  AAV-PHP.eB transduces both the inner and outer retina with high efficacy in mice.

Authors:  Arpad Palfi; Naomi Chadderton; Sophia Millington-Ward; Iris Post; Pete Humphries; Paul F Kenna; G Jane Farrar
Journal:  Mol Ther Methods Clin Dev       Date:  2022-03-28       Impact factor: 5.849

Review 6.  Advancing precision medicines for ocular disorders: Diagnostic genomics to tailored therapies.

Authors:  Priyalakshmi Panikker; Shomereeta Roy; Anuprita Ghosh; B Poornachandra; Arkasubhra Ghosh
Journal:  Front Med (Lausanne)       Date:  2022-07-15

7.  Clinical and Genetic Re-Evaluation of Inherited Retinal Degeneration Pedigrees following Initial Negative Findings on Panel-Based Next Generation Sequencing.

Authors:  Kirk A J Stephenson; Julia Zhu; Adrian Dockery; Laura Whelan; Tomás Burke; Jacqueline Turner; James J O'Byrne; G Jane Farrar; David J Keegan
Journal:  Int J Mol Sci       Date:  2022-01-17       Impact factor: 5.923

  7 in total

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