Literature DB >> 33466586

The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions.

Fred R Opperdoes1, Anzhelika Butenko2,3, Alexandra Zakharova2, Evgeny S Gerasimov4,5, Sara L Zimmer6, Julius Lukeš3,7, Vyacheslav Yurchenko2,5.   

Abstract

A recently redescribed two-flagellar trypanosomatid Vickermania ingenoplastis is insensitive to the classical inhibitors of respiration and thrives under anaerobic conditions. Using genomic and transcriptomic data, we analyzed its genes of the core metabolism and documented that subunits of the mitochondrial respiratory complexes III and IV are ablated, while those of complexes I, II, and V are all present, along with an alternative oxidase. This explains the previously reported conversion of glucose to acetate and succinate by aerobic fermentation. Glycolytic pyruvate is metabolized to acetate and ethanol by pyruvate dismutation, whereby a unique type of alcohol dehydrogenase (shared only with Phytomonas spp.) processes an excess of reducing equivalents formed under anaerobic conditions, leading to the formation of ethanol. Succinate (formed to maintain the glycosomal redox balance) is converted to propionate by a cyclic process involving three enzymes of the mitochondrial methyl-malonyl-CoA pathway, via a cyclic process, which results in the formation of additional ATP. The unusual structure of the V. ingenoplastis genome and its similarity with that of Phytomonas spp. imply their relatedness or convergent evolution. Nevertheless, a critical difference between these two trypanosomatids is that the former has significantly increased its genome size by gene duplications, while the latter streamlined its genome.

Entities:  

Keywords:  Phytomonas; Vickermania ingenoplastis; genome sequencing; metabolism

Year:  2021        PMID: 33466586      PMCID: PMC7828693          DOI: 10.3390/pathogens10010068

Source DB:  PubMed          Journal:  Pathogens        ISSN: 2076-0817


  60 in total

1.  BUSCO: Assessing Genome Assembly and Annotation Completeness.

Authors:  Mathieu Seppey; Mosè Manni; Evgeny M Zdobnov
Journal:  Methods Mol Biol       Date:  2019

2.  QUAST: quality assessment tool for genome assemblies.

Authors:  Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal:  Bioinformatics       Date:  2013-02-19       Impact factor: 6.937

3.  New approach to screening drugs for activity against African trypanosomes.

Authors:  A H Fairlamb; F R Opperdoes; P Borst
Journal:  Nature       Date:  1977-01-20       Impact factor: 49.962

4.  Lineage-specific activities of a multipotent mitochondrion of trypanosomatid flagellates.

Authors:  Ingrid Škodová-Sveráková; Zdeněk Verner; Tomáš Skalický; Jan Votýpka; Anton Horváth; Julius Lukeš
Journal:  Mol Microbiol       Date:  2015-01-30       Impact factor: 3.501

5.  Catalase in Leishmaniinae: With me or against me?

Authors:  Natalya Kraeva; Eva Horáková; Alexei Y Kostygov; Luděk Kořený; Anzhelika Butenko; Vyacheslav Yurchenko; Julius Lukeš
Journal:  Infect Genet Evol       Date:  2016-07-02       Impact factor: 3.342

Review 6.  Reductionist Pathways for Parasitism in Euglenozoans? Expanded Datasets Provide New Insights.

Authors:  Anzhelika Butenko; Michael Hammond; Mark C Field; Michael L Ginger; Vyacheslav Yurchenko; Julius Lukeš
Journal:  Trends Parasitol       Date:  2020-10-27

7.  Protein composition of Trypanosoma brucei mitochondrial membranes.

Authors:  Nathalie Acestor; Aswini K Panigrahi; Yuko Ogata; Atashi Anupama; Kenneth D Stuart
Journal:  Proteomics       Date:  2009-12       Impact factor: 3.984

Review 8.  A fatty-acid synthesis mechanism specialized for parasitism.

Authors:  Soo Hee Lee; Jennifer L Stephens; Paul T Englund
Journal:  Nat Rev Microbiol       Date:  2007-04       Impact factor: 60.633

9.  BEDTools: The Swiss-Army Tool for Genome Feature Analysis.

Authors:  Aaron R Quinlan
Journal:  Curr Protoc Bioinformatics       Date:  2014-09-08

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

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  2 in total

1.  Leishmania guyanensis M4147 as a new LRV1-bearing model parasite: Phosphatidate phosphatase 2-like protein controls cell cycle progression and intracellular lipid content.

Authors:  Alexandra Zakharova; Amanda T S Albanaz; Fred R Opperdoes; Ingrid Škodová-Sveráková; Diana Zagirova; Andreu Saura; Lˇubomíra Chmelová; Evgeny S Gerasimov; Tereza Leštinová; Tomáš Bečvář; Jovana Sádlová; Petr Volf; Julius Lukeš; Anton Horváth; Anzhelika Butenko; Vyacheslav Yurchenko
Journal:  PLoS Negl Trop Dis       Date:  2022-06-24

2.  Comparative Analysis of Three Trypanosomatid Catalases of Different Origin.

Authors:  Ľubomíra Chmelová; Claretta Bianchi; Amanda T S Albanaz; Jana Režnarová; Richard Wheeler; Alexei Yu Kostygov; Natalya Kraeva; Vyacheslav Yurchenko
Journal:  Antioxidants (Basel)       Date:  2021-12-26
  2 in total

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