Md Kamrul Hasan1, Md Ashraful Alam2, Md Toufick E Elahi3, Shidhartho Roy4, Robert Martí5. 1. Department of Electrical and Electronic Engineering, Khulna University of Engineering & Technology, Khulna 9203, Bangladesh. Electronic address: m.k.hasan@eee.kuet.ac.bd. 2. Department of Electrical and Electronic Engineering, Khulna University of Engineering & Technology, Khulna 9203, Bangladesh. Electronic address: alam1603001@stud.kuet.ac.bd. 3. Department of Electrical and Electronic Engineering, Khulna University of Engineering & Technology, Khulna 9203, Bangladesh. Electronic address: toufick1469@gmail.com. 4. Department of Electrical and Electronic Engineering, Khulna University of Engineering & Technology, Khulna 9203, Bangladesh. Electronic address: shidhartho@ieee.org. 5. Computer Vision and Robotics Institute, University of Girona, Spain. Electronic address: robert.marti@udg.edu.
Abstract
BACKGROUND AND OBJECTIVE: In modern ophthalmology, automated Computer-aided Screening Tools (CSTs) are crucial non-intrusive diagnosis methods, where an accurate segmentation of Optic Disc (OD) and localization of OD and Fovea centers are substantial integral parts. However, designing such an automated tool remains challenging due to small dataset sizes, inconsistency in spatial, texture, and shape information of the OD and Fovea, and the presence of different artifacts. METHODS: This article proposes an end-to-end encoder-decoder network, named DRNet, for the segmentation and localization of OD and Fovea centers. In our DRNet, we propose a skip connection, named residual skip connection, for compensating the spatial information lost due to pooling in the encoder. Unlike the earlier skip connection in the UNet, the proposed skip connection does not directly concatenate low-level feature maps from the encoder's beginning layers with the corresponding same scale decoder. We validate DRNet using different publicly available datasets, such as IDRiD, RIMONE, DRISHTI-GS, and DRIVE for OD segmentation; IDRiD and HRF for OD center localization; and IDRiD for Fovea center localization. RESULTS: The proposed DRNet, for OD segmentation, achieves mean Intersection over Union (mIoU) of 0.845, 0.901, 0.933, and 0.920 for IDRiD, RIMONE, DRISHTI-GS, and DRIVE, respectively. Our OD segmentation result, in terms of mIoU, outperforms the state-of-the-art results for IDRiD and DRIVE datasets, whereas it outperforms state-of-the-art results concerning mean sensitivity for RIMONE and DRISHTI-GS datasets. The DRNet localizes the OD center with mean Euclidean Distance (mED) of 20.23 and 13.34 pixels, respectively, for IDRiD and HRF datasets; it outperforms the state-of-the-art by 4.62 pixels for IDRiD dataset. The DRNet also successfully localizes the Fovea center with mED of 41.87 pixels for the IDRiD dataset, outperforming the state-of-the-art by 1.59 pixels for the same dataset. CONCLUSION: As the proposed DRNet exhibits excellent performance even with limited training data and without intermediate intervention, it can be employed to design a better-CST system to screen retinal images. Our source codes, trained models, and ground-truth heatmaps for OD and Fovea center localization will be made publicly available upon publication at GitHub.1.
BACKGROUND AND OBJECTIVE: In modern ophthalmology, automated Computer-aided Screening Tools (CSTs) are crucial non-intrusive diagnosis methods, where an accurate segmentation of Optic Disc (OD) and localization of OD and Fovea centers are substantial integral parts. However, designing such an automated tool remains challenging due to small dataset sizes, inconsistency in spatial, texture, and shape information of the OD and Fovea, and the presence of different artifacts. METHODS: This article proposes an end-to-end encoder-decoder network, named DRNet, for the segmentation and localization of OD and Fovea centers. In our DRNet, we propose a skip connection, named residual skip connection, for compensating the spatial information lost due to pooling in the encoder. Unlike the earlier skip connection in the UNet, the proposed skip connection does not directly concatenate low-level feature maps from the encoder's beginning layers with the corresponding same scale decoder. We validate DRNet using different publicly available datasets, such as IDRiD, RIMONE, DRISHTI-GS, and DRIVE for OD segmentation; IDRiD and HRF for OD center localization; and IDRiD for Fovea center localization. RESULTS: The proposed DRNet, for OD segmentation, achieves mean Intersection over Union (mIoU) of 0.845, 0.901, 0.933, and 0.920 for IDRiD, RIMONE, DRISHTI-GS, and DRIVE, respectively. Our OD segmentation result, in terms of mIoU, outperforms the state-of-the-art results for IDRiD and DRIVE datasets, whereas it outperforms state-of-the-art results concerning mean sensitivity for RIMONE and DRISHTI-GS datasets. The DRNet localizes the OD center with mean Euclidean Distance (mED) of 20.23 and 13.34 pixels, respectively, for IDRiD and HRF datasets; it outperforms the state-of-the-art by 4.62 pixels for IDRiD dataset. The DRNet also successfully localizes the Fovea center with mED of 41.87 pixels for the IDRiD dataset, outperforming the state-of-the-art by 1.59 pixels for the same dataset. CONCLUSION: As the proposed DRNet exhibits excellent performance even with limited training data and without intermediate intervention, it can be employed to design a better-CST system to screen retinal images. Our source codes, trained models, and ground-truth heatmaps for OD and Fovea center localization will be made publicly available upon publication at GitHub.1.
Authors: Yukun Zhou; Siegfried K Wagner; Mark A Chia; An Zhao; Peter Woodward-Court; Moucheng Xu; Robbert Struyven; Daniel C Alexander; Pearse A Keane Journal: Transl Vis Sci Technol Date: 2022-07-08 Impact factor: 3.048