Literature DB >> 33461032

Can antiepileptic efficacy and epilepsy variables be studied from electronic health records? A review of current approaches.

Barbara M Decker1, Chloé E Hill2, Steven N Baldassano3, Pouya Khankhanian3.   

Abstract

As automated data extraction and natural language processing (NLP) are rapidly evolving, improving healthcare delivery by harnessing large data is garnering great interest. Assessing antiepileptic drug (AED) efficacy and other epilepsy variables pertinent to healthcare delivery remain a critical barrier to improving patient care. In this systematic review, we examined automatic electronic health record (EHR) extraction methodologies pertinent to epilepsy. We also reviewed more generalizable NLP pipelines to extract other critical patient variables. Our review found varying reports of performance measures. Whereas automated data extraction pipelines are a crucial advancement, this review calls attention to standardizing NLP methodology and accuracy reporting for greater generalizability. Moreover, the use of crowdsourcing competitions to spur innovative NLP pipelines would further advance this field.
Copyright © 2021 British Epilepsy Association. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Antiepileptic drug efficacy; Automated extraction; Electronic health record; Epilepsy; Natural language processing

Mesh:

Substances:

Year:  2021        PMID: 33461032      PMCID: PMC7897304          DOI: 10.1016/j.seizure.2020.11.011

Source DB:  PubMed          Journal:  Seizure        ISSN: 1059-1311            Impact factor:   3.184


  70 in total

1.  Detection and localization of focal cortical dysplasia by voxel-based 3-D MRI analysis.

Authors:  Jan Kassubek; Hans-Jürgen Huppertz; Joachim Spreer; Andreas Schulze-Bonhage
Journal:  Epilepsia       Date:  2002-06       Impact factor: 5.864

2.  Large-scale identification of patients with cerebral aneurysms using natural language processing.

Authors:  Victor M Castro; Dmitriy Dligach; Sean Finan; Sheng Yu; Anil Can; Muhammad Abd-El-Barr; Vivian Gainer; Nancy A Shadick; Shawn Murphy; Tianxi Cai; Guergana Savova; Scott T Weiss; Rose Du
Journal:  Neurology       Date:  2016-12-07       Impact factor: 9.910

3.  Automated Extraction of Substance Use Information from Clinical Texts.

Authors:  Yan Wang; Elizabeth S Chen; Serguei Pakhomov; Elliot Arsoniadis; Elizabeth W Carter; Elizabeth Lindemann; Indra Neil Sarkar; Genevieve B Melton
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

4.  Using natural language processing for identification of herpes zoster ophthalmicus cases to support population-based study.

Authors:  Chengyi Zheng; Yi Luo; Cheryl Mercado; Lina Sy; Steven J Jacobsen; Brad Ackerson; Bruno Lewin; Hung Fu Tseng
Journal:  Clin Exp Ophthalmol       Date:  2018-07-04       Impact factor: 4.207

5.  Rapid Development of Specialty Population Registries and Quality Measures from Electronic Health Record Data*. An Agile Framework.

Authors:  Vaishnavi Kannan; Jason S Fish; Jacqueline M Mutz; Angela R Carrington; Ki Lai; Lisa S Davis; Josh E Youngblood; Mark R Rauschuber; Kathryn A Flores; Evan J Sara; Deepa G Bhat; DuWayne L Willett
Journal:  Methods Inf Med       Date:  2017-06-14       Impact factor: 2.176

6.  The prevalence of problem opioid use in patients receiving chronic opioid therapy: computer-assisted review of electronic health record clinical notes.

Authors:  Roy E Palmer; David S Carrell; David Cronkite; Kathleen Saunders; David E Gross; Elizabeth Masters; Sean Donevan; Timothy R Hylan; Michael Von Kroff
Journal:  Pain       Date:  2015-07       Impact factor: 6.961

7.  Enhancing Risk Assessment in Patients Receiving Chronic Opioid Analgesic Therapy Using Natural Language Processing.

Authors:  Irina V Haller; Colleen M Renier; Mitch Juusola; Paul Hitz; William Steffen; Michael J Asmus; Terri Craig; Jack Mardekian; Elizabeth T Masters; Thomas E Elliott
Journal:  Pain Med       Date:  2017-10-01       Impact factor: 3.750

8.  Utility of linking primary care electronic medical records with Canadian census data to study the determinants of chronic disease: an example based on socioeconomic status and obesity.

Authors:  Suzanne Biro; Tyler Williamson; Jannet Ann Leggett; David Barber; Rachael Morkem; Kieran Moore; Paul Belanger; Brian Mosley; Ian Janssen
Journal:  BMC Med Inform Decis Mak       Date:  2016-03-11       Impact factor: 2.796

9.  Using natural language processing of clinical text to enhance identification of opioid-related overdoses in electronic health records data.

Authors:  Brian Hazlehurst; Carla A Green; Nancy A Perrin; John Brandes; David S Carrell; Andrew Baer; Angela DeVeaugh-Geiss; Paul M Coplan
Journal:  Pharmacoepidemiol Drug Saf       Date:  2019-06-19       Impact factor: 2.890

10.  Categorizing medications from unstructured clinical notes.

Authors:  Faisal Farooq; Shipeng Yu; Vikram Anand; Balaji Krishnapuram
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2013-03-18
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  3 in total

1.  Harnessing the power of the electronic health record for ALS research and quality improvement: CReATe CAPTURE-ALS and the ALS Toolkit.

Authors:  Volkan Granit; Anne-Laure Grignon; Joanne Wuu; Jonathan Katz; David Walk; Sumaira Hussain; Jessica Hernandez; Carlayne Jackson; James Caress; Tom Yosick; Nancy Smider; Michael Benatar
Journal:  Muscle Nerve       Date:  2021-11-16       Impact factor: 3.217

2.  Development of a natural language processing algorithm to extract seizure types and frequencies from the electronic health record.

Authors:  Barbara M Decker; Alexandra Turco; Jian Xu; Samuel W Terman; Nikitha Kosaraju; Alisha Jamil; Kathryn A Davis; Brian Litt; Colin A Ellis; Pouya Khankhanian; Chloe E Hill
Journal:  Seizure       Date:  2022-07-20       Impact factor: 3.414

3.  Natural language processing in clinical neuroscience and psychiatry: A review.

Authors:  Claudio Crema; Giuseppe Attardi; Daniele Sartiano; Alberto Redolfi
Journal:  Front Psychiatry       Date:  2022-09-14       Impact factor: 5.435

  3 in total

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