Literature DB >> 33458240

Characterization of the complete chloroplast genome of a medicinal species Euodia ruticarpa in China (Rutaceae).

Hao Liu1, Jian Jin1,2, Rongrong Zhou3, Can Zhong1, Jing Xie1, Weiliang Zhou4, Shuihan Zhang1,2.   

Abstract

Euodia ruticarpa is a medicinal plant recorded in in Chinese Pharmacopeia. Here we report on the complete chloroplast genome sequence of Euodia ruticarpa. The chloroplast genome is 158,762 bp in size and includes two inverted repeat regions of 54,230 bp, which is separated by a large single-copy region of 86,267 bp and a small single copy region of 18,265 bp. A total of 131 genes were predicted, including 37 tRNA, 8 rRNA, and 86 protein-coding genes. Phylogenetic analysis placed Euodia ruticarpa under the family Rutaceae.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Euodia ruticarpa; chloroplast; genome sequence; high-throughput sequencing

Year:  2020        PMID： 33458240      PMCID： PMC7781893          DOI： 10.1080/23802359.2020.1829125

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  9 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  Chromatographic fingerprint study on Evodia rutaecarpa (Juss.) Benth by HPLC/DAD/ESI-MS(n) technique.

Authors:  Xin Zhou; Yang Zhao; Peihai Lei; Zongwei Cai; Hai Liu
Journal:  J Sep Sci       Date:  2010-08       Impact factor: 3.645

Review 3.  Rutaecarpine: A promising cardiovascular protective alkaloid from Evodia rutaecarpa (Wu Zhu Yu).

Authors:  Kun-Ming Tian; Jing-Jie Li; Suo-Wen Xu
Journal:  Pharmacol Res       Date:  2019-01-04       Impact factor: 7.658

Review 4.  Genus Tetradium L.: A comprehensive review on traditional uses, phytochemistry, and pharmacological activities.

Authors:  Zefeng Zhao; Xirui He; Wei Han; Xufei Chen; Peiliang Liu; Xue Zhao; Xing Wang; Lixin Zhang; Shaoping Wu; Xiaohui Zheng
Journal:  J Ethnopharmacol       Date:  2018-11-22       Impact factor: 4.360

5.  Anti-inflammatory and anti-infectious effects of Evodia rutaecarpa (Wuzhuyu) and its major bioactive components.

Authors:  Jyh-Fei Liao; Wen-Fei Chiou; Yuh-Chiang Shen; Guei-Jane Wang; Chieh-Fu Chen
Journal:  Chin Med       Date:  2011-02-14       Impact factor: 5.455

6.  RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation.

Authors:  Kevin Liu; C Randal Linder; Tandy Warnow
Journal:  PLoS One       Date:  2011-11-21       Impact factor: 3.240

7.  PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.

Authors:  Xiao-Jian Qu; Michael J Moore; De-Zhu Li; Ting-Shuang Yi
Journal:  Plant Methods       Date:  2019-05-21       Impact factor: 4.993

8.  Characterization of the complete chloroplast genome of a medicinal species Euodia ruticarpa in China (Rutaceae).

Authors:  Hao Liu; Jian Jin; Rongrong Zhou; Can Zhong; Jing Xie; Weiliang Zhou; Shuihan Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2020-10-12       Impact factor: 0.658

9.  Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree.

Authors:  Hannah McPherson; Marlien van der Merwe; Sven K Delaney; Mark A Edwards; Robert J Henry; Emma McIntosh; Paul D Rymer; Melita L Milner; Juelian Siow; Maurizio Rossetto
Journal:  BMC Ecol       Date:  2013-03-14       Impact factor: 2.964
  9 in total
  1 in total

1.  Characterization of the complete chloroplast genome of a medicinal species Euodia ruticarpa in China (Rutaceae).

Authors:  Hao Liu; Jian Jin; Rongrong Zhou; Can Zhong; Jing Xie; Weiliang Zhou; Shuihan Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2020-10-12       Impact factor: 0.658
  1 in total

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