Literature DB >> 33458227

The complete mitochondrial genome of Chionoecetes japonicus (Crustacea: Decapoda: Majoidea).

Yong Hwi Kim1, Kang-Rae Kim1, Jong Yeon Park1, Mu Sung Sung1, Bong Han Yun1,2, Ahhyeon Jeon1, Moo-Sang Kim3, In-Chul Bang1.   

Abstract

The complete mitochondrial genome of Chionoecetes japonicus was sequenced using a specimen collected offshore in the East Sea. The genome includes 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a control region (D-loop), with a total length of 16,060 bp. The overall nucleotide composition was 34.91% A, 17.29% C, 10.93% G, and 36.87% T, with 71.78% A + T. In the phylogenetic tree was constructed using maximum-likelihood and Bayesian inference analyses, C. japonicus and C. japonicus pacificus formed a genetic clade that was sister to C. opilio.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Chionoecetes japonicus; Crustacea; Decapoda; Majoidea; mitogenome

Year:  2020        PMID： 33458227      PMCID： PMC7782079          DOI： 10.1080/23802359.2020.1827061

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  14 in total

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3.  Characterization of the complete mitochondrial genome of Uca lacteus and comparison with other Brachyuran crabs.

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4.  jModelTest 2: more models, new heuristics and parallel computing.

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5.  Molecular phylogeny of a red-snow-crab species complex using mitochondrial and nuclear DNA markers.

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6.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

7.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

8.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

9.  The highly rearranged mitochondrial genomes of the crabs Maja crispata and Maja squinado (Majidae) and gene order evolution in Brachyura.

Authors:  Andrea Basso; Massimiliano Babbucci; Marianna Pauletto; Emilio Riginella; Tomaso Patarnello; Enrico Negrisolo
Journal:  Sci Rep       Date:  2017-06-22       Impact factor: 4.379

10.  Complete mitochondrial genomes from two species of Chinese freshwater crabs of the genus Sinopotamon recovered using next-generation sequencing reveal a novel gene order (Brachyura, Potamidae).

Authors:  Xing Yuhui; Zhou Lijun; Hou Yue; Wang Xiaoqi; Zhang Chen; Wang Ruoran; Pan Da; Sun Hongying
Journal:  Zookeys       Date:  2017-10-02       Impact factor: 1.546
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