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Literature DB >> 33458203

The first complete mitochondrial genome of Blossom-headed Parakeet Psittacula roseata (Psittaciformes: Psittacidae).

Jiansong Zhang^1,2, Chenguang Zhao³, Lingling Zu^1,2, Yubao Duan^1,2.

Abstract

Blossom-headed Parakeet Psittacula roseate is listed as Near Threatened on the IUCN Red List of Threatened Species because of its habitat loss, and declining population. In this study, we first sequenced and described the complete mitochondrial genome and phylogeny of P. roseata. The whole genome of P. roseata was 16,814 bp in length, and contained 14 protein-coding genes, 22 transfer RNA genes, 2 ribosome RNA genes, and 1 non-coding control regions. The overall base composition of the mitochondrial DNA was 31.88% for A, 22.00% for T, 32.88% for C, 13.23% for G, with a GC content of 46.11%. A phylogenetic tree strongly supported that genus Psittacula closely related with genus Eclectus by highly probability.

Entities: Disease Species

Keywords: Blossom-headed parakeet; Psittacula roseata; mitogenome; phylogeny

Year: 2020 PMID： 33458203 PMCID： PMC7782874 DOI： 10.1080/23802359.2020.1825131

Source DB: PubMed Journal: Mitochondrial DNA B Resour ISSN： 2380-2359 Impact factor: 0.658

6 in total

1. MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors: Fredrik Ronquist; John P Huelsenbeck
Journal: Bioinformatics Date: 2003-08-12 Impact factor: 6.937

2. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors: Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal: J Comput Biol Date: 2012-04-16 Impact factor: 1.479

6. A molecular phylogeny of the genus Psittacula sensu lato (Aves: Psittaciformes: Psittacidae: Psittacula, Psittinus, Tanygnathus, †Mascarinus) with taxonomic implications.

Authors: Michael P Braun; Thomas Datzmann; Thomas Arndt; Matthias Reinschmidt; Heinz Schnitker; Norbert Bahr; Hedwig Sauer-Gürth; Michael Wink
Journal: Zootaxa Date: 2019-03-04 Impact factor: 1.091

6 in total

The first complete mitochondrial genome of Blossom-headed Parakeet Psittacula roseata (Psittaciformes: Psittacidae).

1. MrBayes 3: Bayesian phylogenetic inference under mixed models.

2. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

3. The evolution of the Indian Ocean parrots (Psittaciformes): extinction, adaptive radiation and eustacy.

4. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.

5. MITOS: improved de novo metazoan mitochondrial genome annotation.

6. A molecular phylogeny of the genus Psittacula sensu lato (Aves: Psittaciformes: Psittacidae: Psittacula, Psittinus, Tanygnathus, †Mascarinus) with taxonomic implications.