Literature DB >> 33458120

The complete chloroplast genome of Ilex 'Emily Bruner', Ilex cornuta 'Burfordii' × Ilex latifolia (Aquifoliaceae).

Fan Zhang1, Yunlong Li1, Linhe Sun1, Yanwei Zhou1, Hong Chen1, Xiaoqing Lu1, Naiwei Li1, Chuanyong Wang1.   

Abstract

Ilex 'Emily Bruner' is an important economic plant with ornamental and ecological functions in southeastern China. In this study, we characterized the complete chloroplast (cp) genome sequence of 'Emily Bruner' to investigate its phylogenetic relationship. The entire cp genome of 'Emily Bruner' was 157,216 bp in length with 37.68% overall GC content, including a large single-copy (LSC) region of 86,721 bp and a small single-copy (SSC) region of 18,427 bp, which were separated by a pair of inverted repeats (IRs) of 52,068 bp. The cp genome contained 135 genes, including 90 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on whole cp genome sequences showed that 'Emily Bruner' is closest to I. cornuta species.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Ilex ‘Emily Bruner’; complete chloroplast genome phylogenetic analysis

Year:  2020        PMID: 33458120      PMCID: PMC7782960          DOI: 10.1080/23802359.2020.1810146

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

1.  Molecular analyses of the genus Ilex (Aquifoliaceae) in southern South America, evidence from AFLP and ITS sequence data.

Authors:  Alexandra M Gottlieb; Gustavo C Giberti; Lidia Poggio
Journal:  Am J Bot       Date:  2005-02       Impact factor: 3.844

2.  Maximum Likelihood Estimation of Fitness Components in Experimental Evolution.

Authors:  Jingxian Liu; Jackson Champer; Anna Maria Langmüller; Chen Liu; Joan Chung; Riona Reeves; Anisha Luthra; Yoo Lim Lee; Andrew H Vaughn; Andrew G Clark; Philipp W Messer
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

3.  GeSeq - versatile and accurate annotation of organelle genomes.

Authors:  Michael Tillich; Pascal Lehwark; Tommaso Pellizzer; Elena S Ulbricht-Jones; Axel Fischer; Ralph Bock; Stephan Greiner
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

4.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

5.  Chloroplast genome structure in Ilex (Aquifoliaceae).

Authors:  Xin Yao; Yun-Hong Tan; Ying-Ying Liu; Yu Song; Jun-Bo Yang; Richard T Corlett
Journal:  Sci Rep       Date:  2016-07-05       Impact factor: 4.379

6.  Integral Phylogenomic Approach over Ilex L. Species from Southern South America.

Authors:  Jimena Cascales; Mariana Bracco; Mariana J Garberoglio; Lidia Poggio; Alexandra M Gottlieb
Journal:  Life (Basel)       Date:  2017-11-22
  6 in total

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