Literature DB >> 33458118

Character-based identification system of scombrids from Indian waters for authentication and conservation purposes.

Sonalismita Mahapatra1, Rathipriya A1, Priyadarshini Dwivedy1, Suresh E1, Shanmugam S A1, Kathivelpandian A1.   

Abstract

Scombrids are the important component of pelagic fishery resources which include 54 species under 15 genera commonly known as mackerels, bonitos, and tunas. Due to the high commercial value attained, there are real chances of fraudulent substitution by species of inferior value. DNA based species identification methods can be applied to detect product adulteration, as well as to better contribute to the conservation and management of these species by providing accurate species identification independently of the age of the individuals or the tissue processed. In this study, a total of 15 commercially important scombrid species from Indian waters were analyzed. Due to the inadequacy of mitochondrial COI barcoding gene in discriminating between some Thunnus species, cytochrome b sequences were used instead. For all the 15 species, we propose a DNA character-based keys which uses a diagnostic combination of nucleotides and respective probes, including the first character-based keys and probes to differentiate between Thunnus albacares and T. obsesus.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  BLOG 2.0; CBIS; Scombrids; authentication; species-specific probes

Year:  2020        PMID: 33458118      PMCID: PMC7783091          DOI: 10.1080/23802359.2020.1810144

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  18 in total

1.  DNA barcoding unveils a high rate of mislabeling in a commercial freshwater catfish from Brazil.

Authors:  Daniel C Carvalho; Danilo A P Neto; Bruno S A F Brasil; Denise A A Oliveira
Journal:  Mitochondrial DNA       Date:  2011-06-27

2.  DNA barcoding Indian marine fishes.

Authors:  W S Lakra; M S Verma; M Goswami; K K Lal; V Mohindra; P Punia; A Gopalakrishnan; K V Singh; R D Ward; P Hebert
Journal:  Mol Ecol Resour       Date:  2011-01       Impact factor: 7.090

3.  Character based identification system for Elasmobranchs for conservation and forensic applications.

Authors:  Sneha Vargheese; Labrechai Mog Chowdhury; Shijin Ameri; Anjela Mercy A; Kathirvelpandian A
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2019-05-09       Impact factor: 1.514

4.  The differentiation of tuna (family: Scombridae) products through the PCR-based analysis of the cytochrome b gene and parvalbumin introns.

Authors:  Asadatun Abdullah; Hartmut Rehbein
Journal:  J Sci Food Agric       Date:  2015-02-19       Impact factor: 3.638

5.  The complete mitochondrial genome sequence of Rastrelliger kanagurta (Perciformes: Scombridae).

Authors:  Ying Chen; Qiqun Cheng; Huiying Qiao; Yuxia Zhu; Wenming Chen
Journal:  Mitochondrial DNA       Date:  2012-10-02

6.  DNA barcoding of recently diverged species: relative performance of matching methods.

Authors:  Robin van Velzen; Emanuel Weitschek; Giovanni Felici; Freek T Bakker
Journal:  PLoS One       Date:  2012-01-17       Impact factor: 3.240

7.  Molecular Identification of Atlantic Bluefin Tuna (Thunnus thynnus, Scombridae) Larvae and Development of a DNA Character-Based Identification Key for Mediterranean Scombrids.

Authors:  Gregory Neils Puncher; Haritz Arrizabalaga; Francisco Alemany; Alessia Cariani; Isik K Oray; F Saadet Karakulak; Gualtiero Basilone; Angela Cuttitta; Salvatore Mazzola; Fausto Tinti
Journal:  PLoS One       Date:  2015-07-06       Impact factor: 3.240

8.  Evolutionary origin of the Scombridae (tunas and mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish families.

Authors:  Masaki Miya; Matt Friedman; Takashi P Satoh; Hirohiko Takeshima; Tetsuya Sado; Wataru Iwasaki; Yusuke Yamanoue; Masanori Nakatani; Kohji Mabuchi; Jun G Inoue; Jan Yde Poulsen; Tsukasa Fukunaga; Yukuto Sato; Mutsumi Nishida
Journal:  PLoS One       Date:  2013-09-04       Impact factor: 3.240

9.  One species in eight: DNA barcodes from type specimens resolve a taxonomic quagmire.

Authors:  Marko Mutanen; Mari Kekkonen; Sean W J Prosser; Paul D N Hebert; Lauri Kaila
Journal:  Mol Ecol Resour       Date:  2015-01-05       Impact factor: 7.090

10.  MFEprimer-3.0: quality control for PCR primers.

Authors:  Kun Wang; Haiwei Li; Yue Xu; Qianzhi Shao; Jianming Yi; Ruichao Wang; Wanshi Cai; Xingyi Hang; Chenggang Zhang; Haoyang Cai; Wubin Qu
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

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