Literature DB >> 33458106

Characterization and comparison of mitogenomes of three 'eyed' turtles Sacalia spp.

Liu Lin1, Huaiqing Chen2, Zhao Wang1, Daniel Gaillard3, Xiaofei Zhai1, Haitao Shi1.   

Abstract

In this paper, we characterized the mitogenomes of three 'eyed' turtles, the Beal's Eyed turtle (Sacalia bealei), the Four Eye-spotted turtle (S. quadriocellata), and the Hainan Four Eye-spotted turtle which was a unique lineage in the four-eyed turtle and considered as an independent species S. insulensis recently. The full lengths of the S. bealei and S. quadriocellata mitogenomes are 16,564 bp, and 16,555 bp, respectively, while the length of partial mitochondrial genome of S. insulensis is 16,433 bp without tailed part of D-loop. All the genes exhibit the typical mitochondrial gene arrangement and transcribing directions of turtles. Phylogenetic analysis indicating that a deep divergence about 7.8% p distance was found between S. bealei and (S. quadriocellata + S. insulensis), and the divergence (2.8% in patristic distance) between S. quadriocellata and S. insulensis is comparable with other closely related species in turtles.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Sacalia bealei; Sacalia insulensis; Sacalia quadriocellata; mitogenome

Year:  2020        PMID: 33458106      PMCID: PMC7782976          DOI: 10.1080/23802359.2020.1806750

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  5 in total

1.  MRBAYES: Bayesian inference of phylogenetic trees.

Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

2.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

3.  Mitochondrial variation of the "eyed" turtles (Sacalia) based on known-locality and trade specimens.

Authors:  Haitao Shi; Jonathan J Fong; James F Parham; Junfeng Pang; Jichao Wang; Meiling Hong; Ya-Ping Zhang
Journal:  Mol Phylogenet Evol       Date:  2008-10-08       Impact factor: 4.286

4.  MODELTEST: testing the model of DNA substitution.

Authors:  D Posada; K A Crandall
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

5.  Disappearance of endangered turtles within China's nature reserves.

Authors:  Shi-Ping Gong; Hai-Tao Shi; Ai-Wu Jiang; Jonathan J Fong; Daniel Gaillard; Ji-Chao Wang
Journal:  Curr Biol       Date:  2017-03-06       Impact factor: 10.834

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.