Literature DB >> 33458069

The complete mitochondrial genome of Iphisa elegans (Reptilia: Squamata: Gymnophthalmidae).

Jean-Pierre Vacher1, Sophie Manzi1, Miguel Trefaut Rodrigues2, Antoine Fouquet1.   

Abstract

The complete mitogenome of the lizard Iphisa elegans Gray, 1851 was sequenced using a shotgun approach on an Illumina HiSeq 3000 platform, providing the first mitogenome for Gymnophthalmidae. The genome was 18,622 bp long, with 13 protein-coding genes, two rRNA (12S and 16S), and 22 tRNA, as well as the control region. A maximum likelihood phylogenetic analysis including I. elegans and all other available mitogenomes of Squamata provided a tree in accordance with previous phylogenetic relationships inferred for Squamata.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Amazonia; Gymnophthalmidae; Reptilia; mitochondrial genome

Year:  2020        PMID： 33458069      PMCID： PMC7782234          DOI： 10.1080/23802359.2020.1797549

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  6 in total

1.  A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes.

Authors:  R Alexander Pyron; Frank T Burbrink; John J Wiens
Journal:  BMC Evol Biol       Date:  2013-04-29       Impact factor: 3.260

2.  Fast assembly of the mitochondrial genome of a plant parasitic nematode (Meloidogyne graminicola) using next generation sequencing.

Authors:  Guillaume Besnard; Frank Jühling; Élodie Chapuis; Loubab Zedane; Émeline Lhuillier; Thierry Mateille; Stéphane Bellafiore
Journal:  C R Biol       Date:  2014-04-04       Impact factor: 1.583

3.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

4.  MITOS: improved de novo metazoan mitochondrial genome annotation.

Authors:  Matthias Bernt; Alexander Donath; Frank Jühling; Fabian Externbrink; Catherine Florentz; Guido Fritzsch; Joern Pütz; Martin Middendorf; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-09-07       Impact factor: 4.286

5.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

6.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937
  6 in total
  1 in total

1.  The first mitochondrial genome of a South America parthenogenetic lizard (Squamata: Gymnophthalmidae).

Authors:  Tuliana O Brunes; Mariana L Lyra; José A Maldonado; Katia C M Pellegrino; Miguel Trefaut Rodrigues; Matthew K Fujita
Journal:  Mitochondrial DNA B Resour       Date:  2021-07-15       Impact factor: 0.658
  1 in total

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