Literature DB >> 33458068

Complete plastid genome of Rhododendron griersonianum, a critically endangered plant with extremely small populations (PSESP) from southwest China.

Detuan Liu1,2, Chaonan Fu2, Lingjuan Yin3, Yongpeng Ma1,2.   

Abstract

The complete plastid genome of Rhododendron griersonianum, a critically endangered plant species with extremely small populations, was obtained using Illumina HiSeq X Ten and ONT PromethION sequencing. The full length of the plastid genome is 206,467 bp with an overall GC content of 35.8%, which encodes 118 unique genes, including 78 protein-coding genes, 36 tRNA and 4 rRNA genes. Phylogenetic analysis revealed that all Rhododendron species formed a monophyletic clade. This study provides a valuable reference and will facilitate future studies related to the general characteristics and evolution of plastid genomes in the genus Rhododendron.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  PSESP; Phylogeny; Plastid; Rhododendron griersonianum

Year:  2020        PMID: 33458068      PMCID: PMC7782577          DOI: 10.1080/23802359.2020.1800427

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

1.  REPuter: fast computation of maximal repeats in complete genomes.

Authors:  S Kurtz; C Schleiermacher
Journal:  Bioinformatics       Date:  1999-05       Impact factor: 6.937

2.  PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies.

Authors:  Dong Zhang; Fangluan Gao; Ivan Jakovlić; Hong Zou; Jin Zhang; Wen X Li; Gui T Wang
Journal:  Mol Ecol Resour       Date:  2019-11-06       Impact factor: 7.090

3.  FMLRC: Hybrid long read error correction using an FM-index.

Authors:  Jeremy R Wang; James Holt; Leonard McMillan; Corbin D Jones
Journal:  BMC Bioinformatics       Date:  2018-02-09       Impact factor: 3.169

4.  PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.

Authors:  Xiao-Jian Qu; Michael J Moore; De-Zhu Li; Ting-Shuang Yi
Journal:  Plant Methods       Date:  2019-05-21       Impact factor: 4.993

5.  Complete chloroplast genome of Rhododendron pulchrum, an ornamental medicinal and food tree.

Authors:  Jian Shuang Shen; Xue Qin Li; Xiang Tao Zhu; Xiao Ling Huang; Song Heng Jin
Journal:  Mitochondrial DNA B Resour       Date:  2019-10-11       Impact factor: 0.658

6.  The complete chloroplast genome of Rhododendron delavayi (Ericaceae).

Authors:  Jie Liu; Ting Chen; Yubin Zhang; Yuke Li; Jiyi Gong; Yin Yi
Journal:  Mitochondrial DNA B Resour       Date:  2019-12-09       Impact factor: 0.658

  6 in total
  2 in total

1.  The complete chloroplast genome of Rhododendron datiandingense (Ericaceae).

Authors:  Zheng-Feng Wang; Hui-Fang Feng; You-Yu Li; Hui-Feng Wang; Hong-Lin Cao
Journal:  Mitochondrial DNA B Resour       Date:  2021-05-24       Impact factor: 0.658

2.  The complete chloroplast genome of Rhododendron shanii W.P. Fang (Ericaceae), a endemic plant from the Southern Dabie Mountains of China.

Authors:  Huan-Xi Yu; Wang-Gu Xu; Jian-Liang Zhang; Ying-Ying Lv; Peng Chen; Bao-Kun Xu; Chang Qu; Zhi Wang
Journal:  Mitochondrial DNA B Resour       Date:  2022-10-11       Impact factor: 0.610

  2 in total

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